Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ODQ18_RS04675 Genome accession   NZ_CP107039
Coordinates   841501..842121 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain 11060     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 836501..847121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS04655 (ODQ18_04655) dnaD 836787..837485 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  ODQ18_RS04660 (ODQ18_04660) nth 837504..838163 (+) 660 WP_009967580.1 endonuclease III -
  ODQ18_RS04665 (ODQ18_04665) ypoC 838160..838654 (+) 495 WP_041849962.1 YpoC family protein -
  ODQ18_RS04670 (ODQ18_04670) ponA 838729..841479 (-) 2751 WP_041849961.1 PBP1A family penicillin-binding protein -
  ODQ18_RS04675 (ODQ18_04675) recU 841501..842121 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ODQ18_RS04680 (ODQ18_04680) yppC 842162..843124 (+) 963 WP_041849960.1 DUF2515 domain-containing protein -
  ODQ18_RS04685 (ODQ18_04685) sspM 843149..843253 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ODQ18_RS04690 (ODQ18_04690) yppD 843452..843697 (+) 246 WP_041849959.1 DUF5446 family protein -
  ODQ18_RS04695 (ODQ18_04695) yppE 843743..844114 (+) 372 WP_021481525.1 YppE family protein -
  ODQ18_RS04700 (ODQ18_04700) yppF 844153..844341 (-) 189 WP_003230690.1 YppF family protein -
  ODQ18_RS04705 (ODQ18_04705) sppG 844529..844906 (+) 378 WP_004398696.1 YppG family protein -
  ODQ18_RS04710 (ODQ18_04710) ypqA 844927..845346 (-) 420 WP_041849958.1 Hsp20/alpha crystallin family protein -
  ODQ18_RS04715 (ODQ18_04715) ptsA 845484..845990 (+) 507 WP_015483368.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=737629 ODQ18_RS04675 WP_004399067.1 841501..842121(-) (recU) [Bacillus subtilis strain 11060]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=737629 ODQ18_RS04675 WP_004399067.1 841501..842121(-) (recU) [Bacillus subtilis strain 11060]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1