Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ODQ18_RS03695 Genome accession   NZ_CP107039
Coordinates   665422..666225 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain 11060     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 660422..671225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS03675 (ODQ18_03675) yqxC 660532..661377 (+) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  ODQ18_RS03680 (ODQ18_03680) argR 661475..661924 (+) 450 WP_003230265.1 arginine repressor ArgR -
  ODQ18_RS03685 (ODQ18_03685) recN 661961..663691 (+) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  ODQ18_RS03690 (ODQ18_03690) spoIVB 663866..665146 (+) 1281 WP_004398697.1 SpoIVB peptidase -
  ODQ18_RS03695 (ODQ18_03695) spo0A 665422..666225 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ODQ18_RS03700 (ODQ18_03700) yqiG 666690..667808 (-) 1119 WP_032726120.1 NADH-dependent flavin oxidoreductase -
  ODQ18_RS03705 (ODQ18_03705) - 667881..668033 (-) 153 WP_014480226.1 hypothetical protein -
  ODQ18_RS03710 (ODQ18_03710) yqiH 668341..668634 (+) 294 WP_003230284.1 lipoprotein -
  ODQ18_RS03715 (ODQ18_03715) yqiI 668649..669269 (+) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase family protein -
  ODQ18_RS03720 (ODQ18_03720) glpQB 669348..670079 (+) 732 WP_041850009.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=737628 ODQ18_RS03695 WP_003226427.1 665422..666225(+) (spo0A) [Bacillus subtilis strain 11060]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=737628 ODQ18_RS03695 WP_003226427.1 665422..666225(+) (spo0A) [Bacillus subtilis strain 11060]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1