Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ODQ18_RS03170 Genome accession   NZ_CP107039
Coordinates   575567..576334 (+) Length   255 a.a.
NCBI ID   WP_041850024.1    Uniprot ID   -
Organism   Bacillus subtilis strain 11060     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 570567..581334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS03140 (ODQ18_03140) pgpH 570863..572998 (+) 2136 WP_015251683.1 cyclic-di-AMP phosphodiesterase PgpH -
  ODQ18_RS03145 (ODQ18_03145) ybeY 572999..573472 (+) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  ODQ18_RS03150 (ODQ18_03150) unpK 573453..573824 (+) 372 WP_015384119.1 diacylglycerol kinase family protein -
  ODQ18_RS03155 (ODQ18_03155) - 573943..574353 (+) 411 WP_003230049.1 cytidine deaminase -
  ODQ18_RS03160 (ODQ18_03160) era 574334..575239 (+) 906 WP_003230051.1 GTPase Era -
  ODQ18_RS03165 (ODQ18_03165) yqzL 575387..575530 (+) 144 WP_003230053.1 YqzL family protein -
  ODQ18_RS03170 (ODQ18_03170) recO 575567..576334 (+) 768 WP_041850024.1 DNA repair protein RecO Machinery gene
  ODQ18_RS03175 (ODQ18_03175) glyQ 576631..577518 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  ODQ18_RS03180 (ODQ18_03180) glyS 577511..579550 (+) 2040 WP_032722129.1 glycine--tRNA ligase subunit beta -
  ODQ18_RS03185 (ODQ18_03185) ccpN 579683..580321 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  ODQ18_RS03190 (ODQ18_03190) ppsR 580347..581159 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29376.06 Da        Isoelectric Point: 8.3080

>NTDB_id=737617 ODQ18_RS03170 WP_041850024.1 575567..576334(+) (recO) [Bacillus subtilis strain 11060]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHFMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=737617 ODQ18_RS03170 WP_041850024.1 575567..576334(+) (recO) [Bacillus subtilis strain 11060]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTAGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAGTCATTAAAACAGCTAAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATTTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992