Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ODS73_RS05030 Genome accession   NZ_CP107038
Coordinates   966323..967276 (+) Length   317 a.a.
NCBI ID   WP_284060637.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BM6001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 964790..971469 966323..967276 within 0


Gene organization within MGE regions


Location: 964790..971469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODS73_RS05025 (ODS73_05020) - 964790..966136 (-) 1347 WP_013193410.1 IS1380-like element ISSpn5 family transposase -
  ODS73_RS05030 (ODS73_05025) coiA 966323..967276 (+) 954 WP_284060637.1 competence protein CoiA Machinery gene
  ODS73_RS05035 (ODS73_05030) pepF 967295..969097 (+) 1803 WP_000244159.1 oligoendopeptidase F Regulator
  ODS73_RS05040 (ODS73_05035) - 969099..969812 (+) 714 WP_000230399.1 O-methyltransferase -
  ODS73_RS05045 (ODS73_05040) prsA 969879..970820 (+) 942 WP_000727935.1 peptidylprolyl isomerase PrsA -
  ODS73_RS05050 (ODS73_05045) - 970937..971278 (-) 342 Protein_998 transposase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 38277.88 Da        Isoelectric Point: 8.9865

>NTDB_id=737547 ODS73_RS05030 WP_284060637.1 966323..967276(+) (coiA) [Streptococcus pneumoniae strain BM6001]
MFVARDARGEFVNVLEDKLEKQAYTCPACGGQLHLRQGPSVRTHFAHKSLKDCDFFFENESPEHLANKESLYHWLKKETK
VQLEYPLSELKQIADVFVNGNLALEVQCSPLPQKVLKERSEGYRSQGYQVLWLLGQKLWLKERLTRLQQGFLYFSQNMGF
YVWELDKEKQVLRLKYLIYQDLRGKLHYQIKEFSYGQGSLLEILRLPYKRQKISHFTVSEDKDICRYIRQQLYYQNLFWM
KEQAEAYQKGENILTYGLKEWYPQIRPIVGKFFQIEQDLTSYYQHFYTYYQKNPQNDWQKLYPPAFYQQYFLKNMVE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=737547 ODS73_RS05030 WP_284060637.1 966323..967276(+) (coiA) [Streptococcus pneumoniae strain BM6001]
ATGTTTGTTGCGAGAGATGCTAGGGGAGAATTCGTAAATGTGTTAGAGGATAAACTTGAGAAGCAAGCATACACCTGCCC
AGCTTGTGGAGGCCAGCTCCATTTGCGTCAAGGACCAAGTGTACGGACGCATTTTGCCCATAAATCCTTAAAAGACTGTG
ATTTTTTCTTTGAAAATGAAAGTCCAGAACACCTGGCCAATAAGGAATCCCTCTATCACTGGTTAAAAAAAGAGACAAAG
GTTCAATTAGAGTACCCGCTTTCAGAACTTAAACAGATTGCGGATGTATTTGTAAATGGCAATCTAGCTCTAGAAGTTCA
GTGTAGTCCCTTGCCTCAGAAAGTCCTTAAAGAGCGAAGTGAGGGATATCGTAGTCAGGGTTACCAAGTACTGTGGTTGC
TGGGTCAAAAACTGTGGCTCAAGGAGCGTTTGACTCGTCTACAGCAAGGTTTTCTTTATTTCAGTCAAAACATGGGCTTT
TATGTTTGGGAATTAGACAAGGAAAAACAAGTTTTAAGACTCAAATACCTGATTTACCAGGATCTCCGCGGTAAACTCCA
TTATCAAATCAAGGAATTTTCCTATGGTCAAGGTAGTTTATTGGAAATATTGCGTCTTCCCTATAAGAGACAAAAAATAT
CTCATTTTACAGTTTCTGAGGACAAGGACATCTGTCGCTATATCCGGCAACAACTTTATTATCAAAATCTCTTTTGGATG
AAAGAACAAGCAGAAGCCTATCAAAAGGGAGAAAATATCCTGACTTATGGACTGAAAGAATGGTATCCACAAATTCGACC
AATAGTGGGCAAATTTTTCCAGATTGAACAAGACTTGACTAGCTATTATCAGCACTTTTATACCTATTACCAAAAAAATC
CTCAAAATGATTGGCAAAAGCTTTATCCACCAGCCTTTTATCAGCAATATTTCTTGAAAAATATGGTAGAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(13-263)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

99.685

100

0.997
  coiA Streptococcus pneumoniae Rx1

99.054

100

0.991
  coiA Streptococcus pneumoniae D39

99.054

100

0.991
  coiA Streptococcus pneumoniae R6

99.054

100

0.991
  coiA Streptococcus mitis NCTC 12261

88.959

100

0.89
  coiA Lactococcus lactis subsp. cremoris KW2

42.593

100

0.435