Detailed information    

insolico Bioinformatically predicted

Overview

Name   cipB   Type   Regulator
Locus tag   ODS73_RS02995 Genome accession   NZ_CP107038
Coordinates   560969..561118 (+) Length   49 a.a.
NCBI ID   WP_001818346.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BM6001     
Function   indirect induction of ComX; activation of comRS system (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 559299..560102 560969..561118 flank 867


Gene organization within MGE regions


Location: 559299..561118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODS73_RS02980 (ODS73_02980) - 559299..560102 (+) 804 Protein_588 IS5 family transposase -
  ODS73_RS02985 (ODS73_02985) blpM 560252..560506 (+) 255 WP_284060618.1 two-peptide bacteriocin subunit BlpM -
  ODS73_RS02990 (ODS73_02990) blpN 560522..560725 (+) 204 WP_001099492.1 two-peptide bacteriocin subunit BlpN -
  ODS73_RS02995 (ODS73_02995) cipB 560969..561118 (+) 150 WP_001818346.1 bacteriocin-like peptide BlpO Regulator

Sequence

Protein


Download         Length: 49 a.a.        Molecular weight: 5134.91 Da        Isoelectric Point: 3.9133

>NTDB_id=737538 ODS73_RS02995 WP_001818346.1 560969..561118(+) (cipB) [Streptococcus pneumoniae strain BM6001]
MDTKMMSQFAVMDNEMLACVEGGDIDWGRKISCAAGVAYGAIDGCATTV

Nucleotide


Download         Length: 150 bp        

>NTDB_id=737538 ODS73_RS02995 WP_001818346.1 560969..561118(+) (cipB) [Streptococcus pneumoniae strain BM6001]
ATGGATACAAAAATGATGTCACAATTTGCAGTTATGGATAATGAAATGCTTGCTTGCGTTGAAGGTGGAGATATTGATTG
GGGAAGAAAAATTAGTTGTGCAGCAGGGGTTGCATATGGCGCAATTGATGGGTGTGCAACAACGGTTTGA

Domains

Predicted by InterproScan.

Bacteriocin class II with double-glycine leader peptide (Bacteriocin_IIc)

(6-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cipB Streptococcus mutans UA159

51.02

100

0.51