NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	N8A89_RS06590	Genome accession	NZ_CP107031
Coordinates	1449878..1451239 (+)	Length	453 a.a.
NCBI ID	WP_281541538.1	Uniprot ID	-
Organism	Maribacter aestuarii strain JCM18631
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1444878..1456239

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N8A89_RS06560	-	1445319..1446128 (-)	810	WP_289645144.1	glycogen/starch synthase	-
N8A89_RS06565	panC	1446232..1447077 (+)	846	WP_281541534.1	pantoate--beta-alanine ligase	-
N8A89_RS06570	panD	1447091..1447441 (+)	351	WP_281541535.1	aspartate 1-decarboxylase	-
N8A89_RS06575	-	1447444..1448409 (+)	966	WP_289645145.1	lysylphosphatidylglycerol synthase transmembrane domain-containing protein	-
N8A89_RS06580	-	1448446..1449588 (+)	1143	WP_281541536.1	alpha/beta hydrolase-fold protein	-
N8A89_RS06585	-	1449633..1449803 (+)	171	WP_281541537.1	hypothetical protein	-
N8A89_RS06590	radA	1449878..1451239 (+)	1362	WP_281541538.1	DNA repair protein RadA	Machinery gene
N8A89_RS06595	-	1451345..1452385 (-)	1041	WP_281541539.1	aldo/keto reductase	-
N8A89_RS06600	-	1452455..1453219 (-)	765	WP_289645146.1	exodeoxyribonuclease III	-
N8A89_RS06605	-	1453349..1453870 (+)	522	WP_281541540.1	hypothetical protein	-
N8A89_RS06610	-	1453900..1455978 (+)	2079	WP_289645147.1	TonB-dependent receptor	-

Sequence

Protein

Download Length: 453 a.a. Molecular weight: 49569.17 Da Isoelectric Point: 7.1876

                                >NTDB_id=737517 N8A89_RS06590 WP_281541538.1 1449878..1451239(+) (radA) [Maribacter aestuarii strain JCM18631]

MAKTKTAFFCQNCGTQYAKWVGQCSACKEWNTVVEEVVQKEEKVGWKTPSNTAKRVSKPLLVNEISTEKELRLNTFDLEF

NRVLGGGLVPGALVLLGGEPGVGKSTLILQIALKLPYRTLYVSGEESQKQIKMRADRIHPNSQTCFILTETKTQNIFKQI

EATEPDIVVIDSIQTLHSDYIESAAGSISQIRECTAELIKFAKETNTPVILIGHITKDGSIAGPKILEHMVDTVLQFEGD

RNYVYRILRSLKNRFGSTAELGIYEMQGSGLREVNNPSEVLISKNDEGLSGTAIASTVEGMRPLLIEIQALVSTAVYGTP

QRSTTGYNAKRLNMLLAVLEKRAGFKLGAKDVFLNITGGISVDDPAIDLAVIAAILSSNEDIPIEKGFCFAAEVGLAGEI

RPVQRVEQRILEAEKLGYTTIIVSKNNKIGLKCTKINVQLASKIEDVVSSLFG

Nucleotide

Download Length: 1362 bp

                                >NTDB_id=737517 N8A89_RS06590 WP_281541538.1 1449878..1451239(+) (radA) [Maribacter aestuarii strain JCM18631]

ATGGCCAAAACCAAAACAGCATTTTTTTGTCAAAACTGTGGTACCCAATATGCCAAATGGGTGGGACAATGCTCCGCTTG

TAAGGAATGGAACACTGTAGTGGAAGAGGTGGTTCAAAAAGAAGAAAAAGTTGGTTGGAAAACACCATCCAACACCGCTA

AGAGAGTTTCAAAACCTTTATTGGTCAATGAAATAAGTACTGAAAAAGAGCTGCGTCTCAATACTTTTGACCTAGAATTC

AATAGGGTATTGGGTGGCGGTCTTGTTCCTGGCGCTTTGGTATTGCTAGGAGGAGAACCAGGTGTGGGTAAAAGCACACT

CATCTTACAGATTGCCCTAAAATTGCCTTATAGAACTTTGTACGTTTCGGGAGAGGAGAGCCAGAAACAGATAAAAATGA

GGGCGGATAGGATTCATCCCAACAGCCAAACTTGTTTTATCCTAACGGAAACCAAAACGCAGAACATTTTCAAACAAATT

GAAGCTACAGAACCGGATATCGTTGTAATCGATTCTATCCAAACGCTTCATTCAGATTATATTGAATCTGCAGCGGGAAG

CATCTCCCAAATCCGGGAATGTACCGCAGAACTTATCAAATTCGCAAAAGAAACCAATACTCCGGTTATATTGATTGGTC

ATATTACCAAAGACGGATCTATAGCAGGTCCGAAAATTTTAGAGCATATGGTGGATACCGTCCTTCAATTTGAAGGTGAC

CGCAACTATGTATATCGTATTCTTCGGTCTTTAAAAAATAGATTTGGGTCTACGGCAGAATTGGGAATTTATGAAATGCA

GGGGAGCGGACTTAGGGAAGTAAACAACCCTTCCGAGGTACTGATTTCAAAGAATGACGAGGGCCTTAGCGGAACTGCCA

TTGCCTCAACCGTTGAAGGTATGCGGCCTTTGTTGATTGAAATCCAGGCCTTGGTAAGTACGGCGGTATACGGTACGCCA

CAACGTTCCACGACCGGTTACAATGCCAAGAGGTTGAATATGCTATTGGCCGTTTTAGAGAAACGCGCGGGATTTAAACT

GGGTGCAAAGGATGTGTTTTTGAACATAACTGGAGGGATTTCCGTGGATGATCCCGCTATTGACCTAGCGGTAATAGCTG

CCATACTTTCCAGTAATGAGGATATTCCTATCGAAAAGGGATTCTGTTTTGCGGCCGAGGTAGGTCTGGCGGGAGAAATA

CGTCCAGTACAACGTGTGGAACAACGAATATTGGAGGCCGAAAAATTAGGCTATACAACAATCATTGTTTCCAAAAACAA

CAAAATTGGTCTAAAATGCACCAAAATTAACGTGCAGCTGGCTTCCAAAATCGAGGATGTTGTAAGCAGTTTATTCGGTT

AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(338-427)

AAA domain (AAA_25)

(83-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Streptococcus pneumoniae R6	48.571	100	0.488
radA	Streptococcus pneumoniae Rx1	48.571	100	0.488
radA	Streptococcus pneumoniae D39	48.571	100	0.488
radA	Streptococcus pneumoniae TIGR4	48.571	100	0.488
radA	Streptococcus mitis NCTC 12261	48.571	100	0.488
radA	Streptococcus mitis SK321	48.352	100	0.486
radA	Bacillus subtilis subsp. subtilis str. 168	50.233	94.923	0.477

Detailed information NTG0737517