Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   OD459_RS20920 Genome accession   NZ_CP107027
Coordinates   4110190..4111872 (+) Length   560 a.a.
NCBI ID   WP_048008225.1    Uniprot ID   -
Organism   Cytobacillus firmus strain M7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4105190..4116872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OD459_RS20900 (OD459_20900) - 4105195..4106088 (+) 894 WP_048008229.1 polyprenyl synthetase family protein -
  OD459_RS20905 (OD459_20905) dxs 4106743..4108635 (+) 1893 WP_048008227.1 1-deoxy-D-xylulose-5-phosphate synthase -
  OD459_RS20910 (OD459_20910) - 4108639..4109484 (+) 846 WP_048008226.1 TlyA family RNA methyltransferase -
  OD459_RS20915 (OD459_20915) ahrC 4109656..4110105 (+) 450 WP_009332889.1 transcriptional regulator AhrC/ArgR -
  OD459_RS20920 (OD459_20920) recN 4110190..4111872 (+) 1683 WP_048008225.1 DNA repair protein RecN Machinery gene
  OD459_RS20925 (OD459_20925) spoIVB 4112055..4113356 (+) 1302 WP_048008224.1 SpoIVB peptidase -
  OD459_RS20930 (OD459_20930) spo0A 4113669..4114457 (+) 789 WP_048008223.1 sporulation transcription factor Spo0A -
  OD459_RS20935 (OD459_20935) - 4114739..4114879 (-) 141 WP_082138922.1 YycC family protein -
  OD459_RS20940 (OD459_20940) - 4114897..4115133 (-) 237 WP_048008222.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63216.35 Da        Isoelectric Point: 5.3722

>NTDB_id=737470 OD459_RS20920 WP_048008225.1 4110190..4111872(+) (recN) [Cytobacillus firmus strain M7]
MLNEITIRNFAIIKALSVSFEKGLTVLTGETGAGKSIIIDAIHLLAGGRGSAEFVRHGEDKAELEGLFILDDPKHPCYKR
AAEFGIDIEDGMIVLRRDISKAGKSICRVNGKLVTISALREIGSSLIDIHGQHEHQELMNETLHLPLLDQFGGTKISASL
SEYQDIYRLYESTLKKLKNLSENEQQMAHRLDLIQFQLDEIQSAQLKLNEDEDLIEEKRKLSNFERIFDSVQSGYNALQG
EQKGLDWIGLVMGYMNDAAELDPSYKEIAENVANSFYLLEDAASSLRNEMDFMEYDPQRLNEIENRLNEINGLKRKYGKT
VEEVLEYAAKIEEEIETLQNKETHIDKLQKEVTALKKDLMVEGEELSKLRRKSALKLTKLIHKELKELYMEKTVFEVRFF
SDPEVLLKNGIDRAEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIH
HVSVDSQVLCISHLPQVAAIADTHLFIAKNTNEGRTKTTVKPLNEEEKIKEISRMISGVEITDLTKEHAKELLHMAKQLK

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=737470 OD459_RS20920 WP_048008225.1 4110190..4111872(+) (recN) [Cytobacillus firmus strain M7]
TTGTTAAATGAAATAACGATACGAAATTTTGCTATAATCAAAGCCCTTTCTGTCTCATTTGAAAAGGGCTTAACTGTTTT
AACTGGTGAAACAGGGGCAGGGAAATCCATTATTATTGATGCCATTCACTTGCTGGCTGGAGGCAGGGGATCTGCAGAGT
TTGTCCGGCATGGTGAAGATAAAGCTGAGTTAGAGGGGCTTTTTATCCTGGATGATCCTAAGCACCCTTGCTATAAACGA
GCTGCAGAATTTGGGATAGATATTGAAGATGGAATGATTGTTCTCCGCAGAGATATATCAAAGGCAGGAAAAAGCATTTG
CAGAGTGAATGGAAAACTGGTCACTATTTCTGCTTTGAGGGAAATCGGAAGTTCACTTATTGATATACACGGTCAGCACG
AACATCAGGAATTAATGAATGAAACCTTGCATCTTCCTCTTCTCGATCAGTTTGGAGGAACGAAGATTTCTGCTTCCCTT
TCTGAATATCAGGATATCTACAGATTATATGAAAGCACCTTGAAAAAGCTTAAGAATTTAAGCGAGAATGAACAGCAAAT
GGCACACCGGCTTGATTTAATCCAATTTCAGCTTGATGAAATCCAGTCAGCACAGCTGAAATTGAATGAAGATGAGGATC
TGATTGAAGAAAAGAGAAAGCTATCCAATTTTGAACGTATTTTTGACTCAGTTCAGTCTGGCTATAATGCTCTTCAAGGA
GAGCAAAAAGGGCTCGATTGGATTGGGCTGGTTATGGGGTATATGAATGATGCCGCGGAATTGGACCCATCGTATAAAGA
AATAGCGGAAAATGTGGCAAACAGCTTCTATTTGCTTGAAGATGCGGCCAGTTCCCTGCGCAATGAAATGGACTTTATGG
AATATGATCCCCAGAGGCTCAATGAAATCGAAAACAGACTGAATGAAATAAATGGTCTAAAAAGAAAATATGGAAAAACG
GTAGAAGAAGTGCTGGAATACGCAGCAAAAATAGAAGAAGAAATTGAAACCTTGCAAAATAAAGAAACCCATATTGATAA
GCTGCAAAAAGAAGTTACTGCCCTGAAAAAAGACCTTATGGTTGAAGGGGAAGAACTGAGCAAGCTGCGGAGAAAATCTG
CCCTAAAGCTTACGAAGTTAATTCATAAAGAGCTTAAGGAATTATACATGGAAAAAACAGTTTTTGAGGTAAGATTCTTT
TCTGATCCCGAAGTCCTTCTGAAAAATGGCATTGACAGAGCGGAATTCTATATTTCCACCAATCCGGGAGAACCGCTCAA
GCCTCTGTCTAAGATTGCATCGGGAGGGGAATTATCCCGAATCATGCTTGCCTTGAAGAGTATTTTCTCAAAACATCAAG
GTGTTACAAGTATTATCTTCGATGAAGTGGATACAGGCGTGAGCGGAAGAGTGGCACAAGCTATCGCGGAAAAGATTCAT
CATGTTTCCGTGGATTCACAAGTGCTTTGCATCTCTCACCTGCCACAGGTTGCAGCGATTGCAGATACTCATTTATTTAT
TGCTAAAAACACGAATGAAGGACGGACCAAAACTACAGTGAAGCCTCTGAATGAAGAAGAGAAGATAAAAGAAATCAGCC
GTATGATTTCTGGAGTGGAAATAACCGATTTGACGAAAGAGCATGCAAAAGAGCTGCTGCATATGGCTAAACAGCTGAAA
TAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.672

100

0.632