Detailed information NTG0073747

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: ACRAD_RS05535
• Genome accession: NZ_AP019740
• Coordinates: 1202480..1203115 (+)
• Length: 211 a.a.
• NCBI ID: WP_005025578.1
• Uniprot ID: A0A062BXX8
• Organism: Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1197480..1208115

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACRAD_RS05500 (ACRAD_10630)	kdsB	1197942..1198703 (+)	762	WP_005025565.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ACRAD_RS05505 (ACRAD_10640)	-	1198721..1199704 (+)	984	WP_005025569.1	DNA polymerase III subunit delta' C-terminal domain-containing protein	-
ACRAD_RS05510 (ACRAD_10650)	-	1199723..1200064 (+)	342	WP_005014707.1	PilZ domain-containing protein	-
ACRAD_RS05515 (ACRAD_10660)	-	1200108..1200881 (+)	774	WP_005025571.1	TatD family hydrolase	-
ACRAD_RS05520 (ACRAD_10670)	-	1200921..1201529 (+)	609	WP_005025573.1	TetR/AcrR family transcriptional regulator	-
ACRAD_RS05525 (ACRAD_10680)	-	1201544..1202107 (+)	564	WP_005025574.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
ACRAD_RS05530 (ACRAD_10690)	xcpV	1202097..1202483 (+)	387	WP_005025576.1	type II secretion system minor pseudopilin GspI	Machinery gene
ACRAD_RS05535 (ACRAD_10700)	xcpW	1202480..1203115 (+)	636	WP_005025578.1	type II secretion system minor pseudopilin GspJ	Machinery gene
ACRAD_RS05540 (ACRAD_10710)	gspK	1203138..1204082 (+)	945	WP_005025579.1	type II secretion system minor pseudopilin GspK	-
ACRAD_RS05545 (ACRAD_10720)	-	1204179..1204775 (+)	597	WP_005025581.1	6-carboxytetrahydropterin synthase	-
ACRAD_RS05550 (ACRAD_10730)	ung	1204820..1205533 (+)	714	WP_005025584.1	uracil-DNA glycosylase	-
ACRAD_RS05555 (ACRAD_10740)	-	1205530..1206654 (+)	1125	WP_005025586.1	enoyl-CoA hydratase/isomerase family protein	-
ACRAD_RS05560 (ACRAD_10750)	tadA	1206658..1207149 (+)	492	WP_005025588.1	tRNA adenosine(34) deaminase TadA	-
ACRAD_RS05565 (ACRAD_10760)	-	1207232..1207666 (+)	435	WP_005025590.1	SRPBCC family protein	-

Sequence

Protein

• Length: 211 a.a.
• Molecular weight: 24116.49 Da
• Isoelectric Point: 5.3446

>NTDB_id=73747 ACRAD_RS05535 WP_005025578.1 1202480..1203115(+) (xcpW) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
MKYKWGFTLVELLVAIAIFAALSALGWKVFDYLIKVKERNSIHEQNLARLQEAYQQILRDSLQLIPLTANNGGELRPALE
LNDQHFIFSKAGVTDPLGQGLGPYERIEYQYSSADQKLYRLKYQNLNTSTAIQPQSSVLLDQVEQYRISVLNPAELNRWP
EGVLDPASQSEQLKILPRGFKINLTINGTEYEWIYSLLNTDDLKEKTINPS

Nucleotide

• Length: 636 bp

>NTDB_id=73747 ACRAD_RS05535 WP_005025578.1 1202480..1203115(+) (xcpW) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
ATGAAATATAAATGGGGTTTTACTCTTGTGGAGCTGTTGGTCGCAATTGCGATTTTTGCAGCACTCTCTGCGCTGGGTTG
GAAGGTTTTTGATTATCTGATCAAAGTAAAAGAACGAAATAGTATACATGAGCAAAATCTTGCCCGGTTACAGGAAGCTT
ATCAGCAAATCTTACGTGACAGCCTGCAACTGATTCCATTAACTGCAAATAATGGAGGAGAGTTGCGTCCTGCACTTGAA
TTAAACGATCAGCATTTTATTTTTAGTAAAGCTGGTGTAACTGATCCTTTGGGCCAAGGGCTGGGGCCTTATGAGCGGAT
CGAATATCAATACAGTAGTGCAGATCAGAAACTGTACCGGTTAAAATATCAAAACCTGAATACTTCAACTGCTATTCAGC
CCCAGTCAAGTGTGCTTCTTGATCAGGTCGAGCAATACCGGATTAGCGTCTTAAATCCGGCTGAACTGAACAGATGGCCT
GAAGGCGTATTAGATCCTGCTTCCCAATCAGAACAGCTTAAAATTCTACCGCGCGGTTTTAAAATCAATCTGACCATAAA
TGGAACTGAATACGAATGGATTTACAGCCTTTTAAATACAGATGATTTAAAAGAAAAAACAATAAATCCATCTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (59-190)

• Prokaryotic N-terminal methylation motif (N_methyl) (6-25)

3D structure

• AlphaFold DB: A0A062BXX8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	65.657	93.839	0.616