Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACRAD_RS05365 Genome accession   NZ_AP019740
Coordinates   1169530..1170483 (+) Length   317 a.a.
NCBI ID   WP_005025520.1    Uniprot ID   -
Organism   Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1164530..1175483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACRAD_RS05350 (ACRAD_10330) - 1166607..1167851 (+) 1245 WP_005025516.1 PD-(D/E)XK nuclease family protein -
  ACRAD_RS05355 (ACRAD_10340) - 1168250..1168468 (+) 219 WP_010700166.1 hypothetical protein -
  ACRAD_RS05360 (ACRAD_10350) - 1168593..1169078 (-) 486 WP_005025518.1 Lrp/AsnC family transcriptional regulator -
  ACRAD_RS05365 (ACRAD_10360) ceuB 1169530..1170483 (+) 954 WP_005025520.1 ABC transporter permease Machinery gene
  ACRAD_RS05370 (ACRAD_10370) - 1170476..1171438 (+) 963 WP_005025524.1 iron chelate uptake ABC transporter family permease subunit -
  ACRAD_RS05375 (ACRAD_10380) - 1171423..1172187 (+) 765 WP_005025526.1 ABC transporter ATP-binding protein -
  ACRAD_RS05380 (ACRAD_10390) - 1172197..1173144 (+) 948 WP_005025528.1 siderophore ABC transporter substrate-binding protein -
  ACRAD_RS05385 (ACRAD_10400) - 1173446..1174654 (-) 1209 WP_005025530.1 MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34620.79 Da        Isoelectric Point: 9.6461

>NTDB_id=73745 ACRAD_RS05365 WP_005025520.1 1169530..1170483(+) (ceuB) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
MIKRRYLFLLLVPLAVISLFTGVGEMNITGLLTGNIHEWQLFWTSRLPRLMAILVAGAGLSVCGLIMQSLSRNRFVSPTT
AGLYDCARLGVLISIILLPAASIFIKTGFAILVTLAGALVFMSILATLKHRDTVFVPLVGMIFGSIISAFTTFIALQMDL
LQNLAGWLQGDFSTVLNGQYELIYLSVPILIVSYFLANRFVLAGIGEDFATNLGLNYKQILFLGLVLVSVITGVVIVTVG
AIPFLGLIVPNIVSLYLGDNIRKTLSHTAILGALLVLVCDLFGRIVIYPYEVSVSLIMGVLGSVLFLWLLLRRYRYA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=73745 ACRAD_RS05365 WP_005025520.1 1169530..1170483(+) (ceuB) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
ATGATTAAACGCCGTTACCTGTTTCTTTTGCTTGTTCCTCTTGCTGTTATTTCGTTATTTACAGGTGTGGGCGAAATGAA
TATTACCGGATTACTGACAGGCAATATTCATGAATGGCAATTATTCTGGACCAGCCGTTTACCACGCTTAATGGCCATTT
TAGTTGCAGGTGCAGGGCTGAGTGTTTGTGGGCTGATTATGCAGTCACTCAGCCGGAACCGTTTTGTTTCCCCAACTACA
GCCGGTCTTTATGATTGTGCCCGGTTAGGTGTTCTCATCTCGATTATCCTGTTGCCAGCCGCTTCTATTTTTATTAAAAC
CGGTTTTGCAATTTTAGTTACATTGGCCGGTGCATTGGTTTTTATGAGTATTCTAGCCACACTCAAGCATCGGGATACCG
TTTTTGTTCCTCTGGTTGGTATGATCTTTGGCAGTATTATTTCTGCATTTACGACTTTTATCGCTTTGCAAATGGACTTG
TTACAAAATCTGGCGGGATGGTTACAGGGAGACTTTTCAACCGTTCTAAATGGTCAATATGAGCTGATCTATTTAAGTGT
ACCCATTTTAATAGTGAGTTATTTTCTGGCCAATCGCTTTGTGCTGGCAGGTATCGGAGAAGACTTTGCAACTAATTTAG
GCCTCAATTATAAACAGATCTTATTTTTAGGACTAGTTCTGGTATCTGTCATTACTGGTGTAGTCATCGTCACAGTTGGA
GCTATCCCATTCTTAGGTTTGATTGTTCCCAATATTGTAAGTCTGTATCTCGGAGATAATATCCGCAAGACTTTATCGCA
TACTGCAATTTTAGGGGCTTTATTGGTACTGGTCTGTGATCTGTTTGGACGTATAGTGATTTATCCGTACGAAGTTTCAG
TAAGTCTGATTATGGGTGTACTGGGCAGTGTGCTTTTCTTGTGGCTCTTGCTACGGAGGTACCGTTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.438

98.738

0.508

Multiple sequence alignment