Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   OD459_RS13640 Genome accession   NZ_CP107027
Coordinates   2652814..2653767 (-) Length   317 a.a.
NCBI ID   WP_163144670.1    Uniprot ID   -
Organism   Cytobacillus firmus strain M7     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2647814..2658767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OD459_RS13615 (OD459_13615) - 2647976..2648812 (+) 837 WP_048008714.1 TetR/AcrR family transcriptional regulator -
  OD459_RS13620 (OD459_13620) - 2648866..2649504 (-) 639 WP_227889091.1 O-methyltransferase -
  OD459_RS13625 (OD459_13625) - 2649886..2650911 (-) 1026 WP_258752021.1 siderophore ABC transporter substrate-binding protein -
  OD459_RS13630 (OD459_13630) - 2651107..2651874 (-) 768 WP_163144674.1 ABC transporter ATP-binding protein -
  OD459_RS13635 (OD459_13635) - 2651871..2652824 (-) 954 WP_163144672.1 iron chelate uptake ABC transporter family permease subunit -
  OD459_RS13640 (OD459_13640) ceuB 2652814..2653767 (-) 954 WP_163144670.1 ABC transporter permease Machinery gene
  OD459_RS13645 (OD459_13645) - 2654043..2654432 (-) 390 WP_263599135.1 ribbon-helix-helix protein, CopG family -
  OD459_RS13650 (OD459_13650) - 2654578..2655009 (-) 432 WP_412059443.1 DUF4275 family protein -
  OD459_RS13655 (OD459_13655) glmS 2655231..2657033 (-) 1803 WP_048008707.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  OD459_RS13660 (OD459_13660) - 2657130..2657255 (-) 126 WP_258752018.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34663.67 Da        Isoelectric Point: 9.3878

>NTDB_id=737445 OD459_RS13640 WP_163144670.1 2652814..2653767(-) (ceuB) [Cytobacillus firmus strain M7]
MRLWMLGSAAIVLSFISLFIGAIDITPKDLLNWESDETHIFLISRIPRLLAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGILISMLFFTNVTYTQQVIFSFAFALAGTFLFMQILDRIKFKDVIFVPLIGIMYGNILSSITTFLGYEADLL
QNLSSWLMGSFTLIIAGRYELLYVSIPAIILAYLYANKFTVAGMGEDFARNLGLSYKLVLNIGLVLVAVISTTVVLTVGV
IPFLGLIVPNIVSLYLGDNLRKTIPHTAVLGIVFLLICDILGRIIIHPYEIPVNVTVAVIGSAIFLTMLLRGRAYAK

Nucleotide


Download         Length: 954 bp        

>NTDB_id=737445 OD459_RS13640 WP_163144670.1 2652814..2653767(-) (ceuB) [Cytobacillus firmus strain M7]
ATGAGATTATGGATGTTAGGAAGTGCAGCCATTGTTCTGTCTTTTATCTCGCTGTTTATCGGTGCAATAGATATAACGCC
TAAGGATCTGCTTAATTGGGAATCAGATGAAACACATATCTTCCTTATCAGCCGCATTCCACGTCTATTGGCGATTATTT
TAGCGGGGGCAGGAATGAGTATTGCCGGTTTAATCATGCAGTCTTTAAGCCGCAATAAGTTTGTATCACCAACAACAGCC
GGAACTTTGGATGCAGCAAAACTGGGTATTTTAATTTCCATGCTGTTTTTTACGAATGTCACTTATACACAGCAGGTTAT
TTTTAGCTTTGCCTTTGCTTTGGCAGGTACATTTCTCTTCATGCAGATTTTAGATCGTATAAAATTTAAAGATGTTATTT
TCGTTCCGTTAATCGGAATTATGTATGGAAATATACTATCTTCCATTACAACGTTTCTTGGATATGAAGCTGATCTGCTG
CAAAATCTATCTTCCTGGCTTATGGGAAGTTTTACTTTGATTATTGCCGGCCGTTATGAGCTTTTATATGTTAGTATTCC
CGCTATTATTCTGGCGTATCTTTATGCGAATAAATTTACGGTTGCCGGAATGGGTGAGGATTTTGCAAGAAATCTTGGCT
TAAGCTATAAGCTGGTACTGAATATTGGCCTGGTCCTTGTTGCGGTTATCTCAACAACGGTGGTTCTTACTGTCGGAGTT
ATTCCATTTTTAGGACTAATCGTTCCCAATATTGTCTCCTTATATTTAGGTGACAACCTGCGCAAAACAATTCCGCATAC
AGCGGTGCTGGGAATTGTCTTCCTATTAATATGTGACATTTTGGGGCGCATCATCATTCATCCTTATGAAATTCCGGTTA
ATGTAACCGTGGCAGTGATAGGCAGTGCTATCTTCTTAACGATGCTGCTAAGGGGGAGAGCATATGCGAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.482

94.953

0.527