Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   OD459_RS07105 Genome accession   NZ_CP107027
Coordinates   1421565..1423382 (-) Length   605 a.a.
NCBI ID   WP_048010949.1    Uniprot ID   A0AA46SL18
Organism   Cytobacillus firmus strain M7     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1416565..1428382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OD459_RS07075 (OD459_07075) - 1416924..1417562 (-) 639 WP_048010943.1 GTP pyrophosphokinase family protein -
  OD459_RS07080 (OD459_07080) - 1417682..1418059 (-) 378 WP_048010944.1 hypothetical protein -
  OD459_RS07085 (OD459_07085) - 1418258..1418848 (+) 591 WP_048010945.1 CYTH domain-containing protein -
  OD459_RS07090 (OD459_07090) - 1418881..1419522 (+) 642 WP_048010946.1 lytic transglycosylase domain-containing protein -
  OD459_RS07095 (OD459_07095) - 1419770..1420174 (+) 405 WP_048010947.1 globin -
  OD459_RS07100 (OD459_07100) - 1420177..1421046 (+) 870 WP_048010986.1 ClpXP adapter SpxH family protein -
  OD459_RS07105 (OD459_07105) pepF 1421565..1423382 (-) 1818 WP_048010949.1 oligoendopeptidase F Regulator
  OD459_RS07110 (OD459_07110) - 1423506..1423814 (-) 309 WP_263599798.1 hypothetical protein -
  OD459_RS07115 (OD459_07115) - 1423827..1424696 (-) 870 WP_263599799.1 competence protein CoiA -
  OD459_RS07120 (OD459_07120) mecA 1425134..1425799 (-) 666 WP_048010951.1 adaptor protein MecA -
  OD459_RS07125 (OD459_07125) spxA 1426147..1426542 (-) 396 WP_009331204.1 transcriptional regulator SpxA -
  OD459_RS07130 (OD459_07130) - 1427018..1427593 (-) 576 WP_048010952.1 GNAT family N-acetyltransferase -
  OD459_RS07135 (OD459_07135) - 1427837..1428025 (+) 189 WP_048010953.1 hypothetical protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69929.42 Da        Isoelectric Point: 4.9923

>NTDB_id=737428 OD459_RS07105 WP_048010949.1 1421565..1423382(-) (pepF) [Cytobacillus firmus strain M7]
MANETTVKKLPARNEISPEDTWRLEDIFPSDDEWNKEYSEVQKLIPDAGKYQGRLGESAETLYAALQFQDHLLSRLGKLY
TYAHMRYDQDTTNSFYQGMDDKIKNLYSEAASALAYIVPELLAEDEEKIAGYLKEKTELQLYKHSLEEINLQRPHVLSAE
QESLLAQASEVLGASSNTFGMLNNADLEFPSIKDENGEEVEITHGRFIRFLESDEQRVRHDAFKAVYETYGKFRNTFAST
LSGNVKKDNFNAKIRNYDSARHAALSADNIPESVYENLVNTINDNLHLLHRYVKLRKKVLGVKELHMYDLYTPLVKEVKM
EIPYNEAKDLILKGLKPLGEDYLNILKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDDKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
NNEALTADSLTKEYYELNKKYFGDEDIVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILQEGQPAVDRYIEF
LKSGSSDYPIEVLKKAGVDMTSSKPIEDACKVFEEKLKEMENLLS

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=737428 OD459_RS07105 WP_048010949.1 1421565..1423382(-) (pepF) [Cytobacillus firmus strain M7]
ATGGCTAATGAAACGACTGTAAAGAAACTGCCGGCAAGGAATGAGATTTCACCTGAAGATACGTGGCGTTTGGAGGATAT
TTTCCCTTCTGATGATGAGTGGAACAAGGAATACAGTGAAGTTCAGAAGCTGATTCCGGATGCAGGTAAGTATCAGGGCA
GGCTCGGAGAAAGTGCTGAAACATTATATGCAGCGCTTCAGTTCCAGGATCATTTACTTTCGCGCCTTGGGAAGCTTTAT
ACATATGCCCATATGCGTTATGACCAGGATACAACAAATTCATTTTATCAGGGAATGGATGACAAAATTAAAAATTTGTA
TTCGGAAGCTGCTAGTGCACTTGCTTATATTGTTCCTGAGCTGCTTGCTGAAGATGAAGAGAAGATTGCAGGCTATTTGA
AGGAAAAAACCGAGCTGCAATTATATAAACATTCACTGGAGGAAATTAATCTTCAAAGGCCTCATGTATTATCTGCTGAG
CAGGAATCCCTGCTTGCTCAGGCTTCCGAGGTGCTTGGGGCTTCCAGTAATACATTTGGAATGCTGAATAATGCGGATTT
GGAGTTTCCGTCCATTAAAGATGAAAATGGGGAAGAAGTCGAAATTACTCACGGACGATTCATCCGTTTTCTTGAAAGTG
ACGAGCAGCGTGTCCGGCATGATGCTTTCAAAGCTGTATATGAGACTTATGGGAAGTTTCGTAATACATTTGCCAGCACT
CTAAGCGGAAACGTAAAAAAAGATAACTTCAACGCTAAGATCCGGAATTATGACTCCGCGCGCCATGCTGCCCTTTCTGC
GGACAATATCCCTGAAAGTGTTTATGAAAATCTGGTCAATACCATTAACGATAACCTGCATTTGCTGCATCGCTATGTCA
AACTCCGCAAGAAGGTTCTTGGGGTTAAGGAGCTTCATATGTACGATCTCTACACTCCTTTAGTGAAGGAAGTAAAAATG
GAGATACCTTATAATGAGGCAAAAGACCTGATTTTAAAAGGATTAAAGCCGCTTGGTGAAGACTATCTAAATATTTTAAA
AGAGGGTTTTGAAAATAGATGGGTTGATGTTCATGAGAATAAAGGCAAAAGGAGCGGGGCTTATTCTTCGGGAACATATG
GCACCAACCCTTATATACTAATGAACTGGCAGGACAATGTGAACAACTTATTTACTCTGGCTCATGAATTTGGCCATTCG
GTTCATAGCTACTATACAAGAAAATATCAGCCATACCCTTATGGAAACTATTCAATTTTTGTTGCAGAGGTTGCCTCTAC
TTGTAATGAAGCCCTCTTAAACGATTATCTGCTAAAAACAATTGATGATGATAAGAAGCGGCTGTATCTGCTGAATCACT
ATCTTGAAGGCTTTAGAGGCACTGTTTTCCGCCAGACCATGTTTGCAGAATTTGAACATCTTATTCATCAAAAGGCGCAA
AACAATGAAGCCTTGACTGCAGATTCATTGACTAAAGAATATTATGAACTTAATAAGAAGTATTTTGGGGATGAAGATAT
CGTAATTGATGAGGAAATCGGCCTGGAATGGTCCAGAATCCCGCATTTCTACTATAATTATTATGTTTATCAATATGCAA
CAGGCTTCAGTGCGGCTACGGCATTAAGCAAGCAAATTCTCCAGGAAGGCCAGCCTGCAGTTGACAGATATATTGAGTTC
CTGAAATCCGGCAGCTCGGATTACCCAATTGAAGTGCTAAAGAAAGCCGGTGTAGATATGACGAGCAGCAAGCCGATTGA
GGATGCCTGCAAAGTATTTGAAGAAAAGCTTAAAGAAATGGAAAACTTGCTTTCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.495

98.182

0.486