Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ACRAD_RS01545 Genome accession   NZ_AP019740
Coordinates   338885..341110 (-) Length   741 a.a.
NCBI ID   WP_005023133.1    Uniprot ID   -
Organism   Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333885..346110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACRAD_RS01525 (ACRAD_02880) - 334149..335102 (-) 954 WP_005023127.1 DnaJ C-terminal domain-containing protein -
  ACRAD_RS01530 (ACRAD_02890) - 335258..335719 (-) 462 WP_005016918.1 DUF2147 domain-containing protein -
  ACRAD_RS01535 (ACRAD_02900) - 336044..336919 (-) 876 WP_005023129.1 Hsp33 family molecular chaperone HslO -
  ACRAD_RS01540 (ACRAD_02910) - 336969..338801 (-) 1833 WP_005023131.1 cation:proton antiporter -
  ACRAD_RS01545 (ACRAD_02920) priA 338885..341110 (-) 2226 WP_005023133.1 primosomal protein N' Machinery gene
  ACRAD_RS01550 (ACRAD_02930) gspF 341266..342471 (+) 1206 WP_005023135.1 type II secretion system inner membrane protein GspF -
  ACRAD_RS01555 (ACRAD_02940) gspG 342509..342946 (+) 438 WP_005023137.1 type II secretion system major pseudopilin GspG -
  ACRAD_RS01560 (ACRAD_02950) - 343283..343618 (+) 336 WP_005023139.1 hypothetical protein -
  ACRAD_RS01565 (ACRAD_02960) lnt 343696..345255 (-) 1560 WP_005023142.1 apolipoprotein N-acyltransferase -
  ACRAD_RS01570 (ACRAD_02970) - 345252..346091 (-) 840 WP_005016900.1 HlyC/CorC family transporter -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84253.44 Da        Isoelectric Point: 9.1601

>NTDB_id=73737 ACRAD_RS01545 WP_005023133.1 338885..341110(-) (priA) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
MPSSSHNNCCIYRVRVAVPVHLYDSFDYLLSAEQYLQAEVGARVAVSFGRQNLIGIIVEKISPDVMPDPRIKLKTITELL
DKEAIIDNKVLSLLTWSAQYYQFPLGEVMQCALPGLLRQGKPLNLLARVWKVVQPDAEQLLKRSIKQQDAYKILKLHAAG
TTEDILNLSGVETATLKTLEKKEIVRCELTAINTTPEPVQLAQMPLTPNEEQHKAIQRILKSLKKFQAFLLDGLTGSGKT
EVYLQVMYEVLKQGKQILVLVPEIGLTPQTISRFKSRFNVDIVLLHSGLSESKRLQAWQHAQTGKASIILGTRSAIYTSL
PRLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSLDSYHLVEQNKLTRLELNQRAGNAVLPKMQL
IDLKVAKKQHGISEQLIKQIQQRLDKKEQVLVFLNRRGYAPVLVCNHCGWQANCPHCDAHFTLHTQPYNHLHCHHCGSIH
RVPESCPECQQTTLKTLGMGTAKVEETLTELFPDFDVIRVDRDSTSRVGQWDRIYQRIHQSQPAILLGTQMLAKGHHFPY
VTLVAILDIDAGLLSFDFRAPERTAQLIIQVAGRAGRGDRRGEVYLQTLRPDHPLLTTLIEKDYRAFAKQALIERQQAQL
PPYRYTVLVRADSRNQQYSQEFVAEIARKLRELAGSQVDIWGPIPAPMERKAGRYRAHLVLLSADRAQLHFYLRQWWAMV
VQQSRQHQLKLSIDVDPQELS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=73737 ACRAD_RS01545 WP_005023133.1 338885..341110(-) (priA) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
ATGCCTAGCTCGTCCCATAATAACTGCTGTATATACCGTGTCCGGGTAGCTGTACCTGTTCATCTCTATGATAGTTTTGA
CTATCTGCTTAGTGCCGAACAATACTTACAGGCAGAAGTCGGTGCGCGGGTAGCAGTATCTTTTGGACGGCAGAATCTGA
TTGGTATCATTGTAGAGAAAATCTCTCCCGATGTTATGCCTGATCCGCGTATCAAGCTTAAGACTATTACTGAGCTGCTC
GACAAGGAAGCCATTATAGACAACAAAGTTTTAAGTTTGTTGACATGGTCTGCACAGTATTATCAATTTCCTTTGGGTGA
GGTAATGCAATGTGCTCTACCCGGCCTGTTGCGTCAGGGTAAACCGCTAAATCTGCTGGCTCGAGTCTGGAAGGTGGTAC
AGCCTGATGCAGAACAGCTGCTCAAGCGTTCAATCAAGCAGCAAGATGCTTATAAGATTTTAAAATTACATGCAGCCGGT
ACAACAGAAGACATTCTGAATTTAAGTGGTGTTGAAACTGCCACCTTAAAAACTCTTGAAAAAAAAGAAATTGTTCGCTG
TGAATTAACAGCAATAAATACCACGCCTGAACCGGTGCAGCTGGCGCAAATGCCACTCACACCCAATGAAGAACAGCACA
AAGCAATTCAGCGTATTTTAAAATCATTGAAGAAATTTCAGGCCTTCTTACTTGATGGTTTGACTGGTAGCGGCAAAACA
GAAGTTTATTTGCAGGTGATGTACGAAGTACTAAAACAGGGCAAGCAGATATTGGTTCTGGTTCCCGAAATCGGGTTGAC
ACCTCAAACCATTTCCCGGTTTAAATCACGGTTTAATGTAGATATTGTACTATTACATTCTGGTTTGAGTGAATCCAAAC
GTTTGCAAGCATGGCAGCATGCCCAAACCGGCAAGGCTTCCATTATTCTCGGAACCCGTTCAGCAATTTATACGTCGTTG
CCCCGGCTGGGACTGATTATTCTGGATGAGGAGCATGATCTGTCATTCAAGCAACAGGAAGGCTTTCGCTACCATGCCCG
TGACGTAGCTCTCTACCGTGCCCATCTGGAAAACTGTCCGATTATTCTTGGCTCAGCCACACCCAGTCTGGATAGCTATC
ATCTGGTAGAACAGAATAAACTGACACGACTGGAACTTAACCAGCGGGCTGGCAATGCGGTCTTACCCAAAATGCAGTTA
ATAGATCTGAAAGTAGCCAAAAAACAGCATGGAATTAGTGAACAGCTCATCAAGCAGATTCAGCAGCGGCTGGACAAAAA
AGAACAGGTGCTGGTTTTTTTAAACCGACGTGGTTATGCGCCGGTACTGGTCTGTAATCATTGTGGCTGGCAGGCCAACT
GCCCCCATTGTGATGCGCATTTTACTCTGCATACACAGCCCTATAATCATCTGCACTGTCATCATTGTGGTTCCATTCAT
CGTGTACCGGAAAGCTGTCCCGAATGTCAGCAAACGACCTTAAAAACGCTCGGGATGGGCACTGCCAAGGTTGAAGAAAC
CCTGACCGAGCTCTTTCCAGATTTTGATGTAATTCGTGTGGACCGTGACAGTACCAGCCGGGTTGGCCAATGGGACCGTA
TCTATCAGCGGATTCATCAAAGCCAGCCTGCTATTTTACTCGGTACCCAAATGTTAGCCAAGGGCCATCATTTTCCCTAC
GTGACCTTGGTTGCGATTCTGGATATTGATGCCGGACTGCTCAGCTTTGATTTTCGTGCGCCGGAACGTACAGCCCAGCT
CATCATTCAGGTGGCTGGTCGTGCTGGCCGTGGAGACCGCAGAGGCGAAGTCTATCTGCAAACTTTAAGGCCTGATCATC
CACTGTTAACTACATTGATCGAGAAAGACTACCGTGCTTTTGCCAAACAAGCACTCATTGAGCGCCAGCAGGCACAGCTG
CCGCCTTATCGTTATACGGTACTGGTACGAGCCGACTCCAGAAACCAGCAATACAGTCAGGAATTTGTAGCTGAAATTGC
TCGTAAGCTACGTGAACTTGCAGGTAGTCAGGTTGATATCTGGGGCCCTATCCCTGCCCCTATGGAGCGTAAGGCGGGTC
GCTACCGGGCCCATCTGGTCCTGCTTTCAGCTGACCGGGCACAGCTGCATTTTTATTTACGGCAATGGTGGGCGATGGTA
GTACAACAGTCACGACAGCATCAGTTAAAACTGAGTATTGACGTTGACCCGCAGGAACTCAGCTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

Type III restriction enzyme, res subunit (ResIII)

(207-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

75.238

99.19

0.746

Multiple sequence alignment