Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OF884_RS13645 Genome accession   NZ_CP107010
Coordinates   2791584..2792189 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Paratyphi B strain SZ21B23     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2786584..2797189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OF884_RS13630 helD 2786801..2788855 (-) 2055 WP_000420497.1 DNA helicase IV -
  OF884_RS13635 - 2788979..2789425 (+) 447 WP_001261218.1 YccF domain-containing protein -
  OF884_RS13640 yccS 2789444..2791597 (+) 2154 WP_000950881.1 YccS family putative transporter -
  OF884_RS13645 sxy/tfoX 2791584..2792189 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  OF884_RS13650 sulA 2792406..2792915 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  OF884_RS13655 ompA 2793272..2794324 (+) 1053 WP_001670727.1 porin OmpA -
  OF884_RS13660 matP 2794396..2794848 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  OF884_RS13665 - 2795034..2796794 (+) 1761 WP_000156454.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=737365 OF884_RS13645 WP_001202375.1 2791584..2792189(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Paratyphi B strain SZ21B23]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=737365 OF884_RS13645 WP_001202375.1 2791584..2792189(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Paratyphi B strain SZ21B23]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAGTGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751