Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QA712_RS08000 Genome accession   NZ_CP121539
Coordinates   1471931..1472686 (+) Length   251 a.a.
NCBI ID   WP_058205599.1    Uniprot ID   -
Organism   Lactococcus lactis strain MA5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1466931..1477686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA712_RS07985 (QA712_07985) - 1467775..1468950 (+) 1176 WP_372756906.1 pyridoxal phosphate-dependent aminotransferase -
  QA712_RS07990 (QA712_07990) - 1469118..1470539 (+) 1422 WP_372756908.1 GW dipeptide domain-containing protein -
  QA712_RS07995 (QA712_07995) - 1470576..1471721 (+) 1146 WP_372756910.1 hypothetical protein -
  QA712_RS08000 (QA712_08000) recO 1471931..1472686 (+) 756 WP_058205599.1 DNA repair protein RecO Machinery gene
  QA712_RS08005 (QA712_08005) - 1472800..1473399 (+) 600 WP_372756912.1 helix-turn-helix domain-containing protein -
  QA712_RS08010 (QA712_08010) - 1473419..1473682 (+) 264 WP_372757942.1 hypothetical protein -
  QA712_RS08015 (QA712_08015) - 1473911..1475191 (+) 1281 WP_372756914.1 radical SAM protein -
  QA712_RS08020 (QA712_08020) - 1475261..1476757 (+) 1497 WP_372756915.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28689.87 Da        Isoelectric Point: 5.9537

>NTDB_id=737324 QA712_RS08000 WP_058205599.1 1471931..1472686(+) (recO) [Lactococcus lactis strain MA5]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGVSLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=737324 QA712_RS08000 WP_058205599.1 1471931..1472686(+) (recO) [Lactococcus lactis strain MA5]
ATGCGTGATGCCGAAACTCAAGGTCTAGTACTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCCCCTTATGCTAGTTCTTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGCTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGGTTTCATTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGC
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGACTTTATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GATGGAATGTCTGGGTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.065

98.008

0.53