Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   QA712_RS07675 Genome accession   NZ_CP121539
Coordinates   1419749..1423360 (+) Length   1203 a.a.
NCBI ID   WP_372756867.1    Uniprot ID   -
Organism   Lactococcus lactis strain MA5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1414749..1428360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA712_RS07665 (QA712_07660) dnaN 1415209..1416351 (+) 1143 WP_003130856.1 DNA polymerase III subunit beta -
  QA712_RS07670 (QA712_07665) rexB 1416457..1419756 (+) 3300 WP_332529512.1 ATP-dependent nuclease subunit B -
  QA712_RS07675 (QA712_07670) rexA 1419749..1423360 (+) 3612 WP_372756867.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  QA712_RS07680 (QA712_07675) - 1423397..1423597 (+) 201 WP_003132155.1 DUF951 domain-containing protein -
  QA712_RS07685 (QA712_07680) - 1423607..1424164 (-) 558 WP_010905025.1 helix-turn-helix domain-containing protein -
  QA712_RS07690 (QA712_07685) ychF 1424446..1425561 (+) 1116 WP_015425597.1 redox-regulated ATPase YchF -
  QA712_RS07695 (QA712_07690) - 1425673..1425996 (+) 324 WP_015425598.1 helix-turn-helix domain-containing protein -
  QA712_RS07700 (QA712_07695) - 1426252..1426596 (+) 345 WP_012896907.1 hypothetical protein -

Sequence

Protein


Download         Length: 1203 a.a.        Molecular weight: 138792.86 Da        Isoelectric Point: 4.9458

>NTDB_id=737323 QA712_RS07675 WP_372756867.1 1419749..1423360(+) (rexA) [Lactococcus lactis strain MA5]
MSEVKLTPEQNEAIHSSGKNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAASELRMRLERDLKKARQES
SDENQARRLTLALQNLSNADIGTMDSFTQKLTKTNFNRVNIDPNFRILADQTESDLIRQEVFEQLVESYLSEDDGLNISK
EKFEELIKNFSKDRNIAGFQKVVYTTYRFASATENPIKWLENQFLKGFETYKSLTDLSADFSADIKENLLIFFELLETSL
TNGVIAKKGVGRDKATLILDNKNELLEAITTKDFATFTELFLSIDTDIRVGSSKDEILSALKKDFSAQKQDLVGSKSKPG
EIRKFVDKIKHGQLIEKYQNQAFEIAENLQKFVIEFYQSYLERKKNENAFEYSDIAHFAIEILEENPDIRETLREHYDEI
MIDEYQDTSHTQERMLELLSNGHNLFMVGDIKQSIYGFRLADPGLFLEKYKDYAKTENPNQLIRLKENFRSRGEVLTFTN
GIFKHLMDEKLGEMTYGKEEALVQGNITDYRVESEKDFYPELLLYKENTSDEETDESEVRISDGEIKGAAQEIKKLIEAG
VEPKDIAILVRSKSNNNKIEDILLSYDIPVVLDEGRVDFLKSMEVLIMLDVLRAIDNPLYDLSLVAMLRSPLFGFNEDEL
TRISTQGSHDLRFWDKILLSLNKEGQNPELINPSLENKLKAFYKKFTEWRKLVNQVAIHDLLWKIYTETYYFDYVGALKN
GEMRQANLQALAVRAESYESSGYKGLFKFVRLINKFMEQNNDLASVNIKLPQNAVRVMTFHKSKGLEFDYVFLMNLQSRF
NDRDLKEDVILSRENGLGMKLIADLKDEADVITDFPYALVKMETFPYMVNKDLKQRAALSEEMRVLYVAFTRAKKKLYLV
GKIKETDKKSGLDLYDNASLEGKILEDKFRNSSRGFQHWILALQNATKLPMKLNVYTKEELEAEKLEFTSQPDFKKLVEE
SEKFDNIMAYSDEIQKAQKIMNYEYPNQAATELSSIQTPSQVKKRSYEKQLQVGEIQPISEFTRVKKLDFSDFGPKKVTA
AEIGSATHSFMQYADFSQADLFSFQATLDEMGFDEKIKNQIDIAKILTLFDTDFGQFLSENVDKTVKEATFSMLRTDEFA
KEQYIVRGICDGFVKLTDKIVLFDYKTDRFTSSSAISEIKERYRDQMNLYSEALKKAYDVNQVDKYLILLGGPQQVFVEK
LDD

Nucleotide


Download         Length: 3612 bp        

>NTDB_id=737323 QA712_RS07675 WP_372756867.1 1419749..1423360(+) (rexA) [Lactococcus lactis strain MA5]
ATGAGTGAAGTAAAATTAACTCCAGAGCAAAATGAAGCCATTCATAGTTCTGGTAAGAATATTTTAGTTTCAGCGAGTGC
TGGTTCTGGAAAAACTTTTGTTATGGCTCAAAGAATTGTCGAGAAAGTCAAACAAGGAATTGAAATTGATCGACTTTTCA
TTTCCACATTTACAAAAAAAGCAGCAAGCGAATTACGGATGCGGCTTGAGCGAGATTTGAAAAAAGCCAGACAAGAAAGT
TCTGATGAAAATCAAGCTCGTAGGTTGACACTTGCTTTACAGAACCTGTCAAATGCTGATATTGGAACTATGGATAGTTT
CACCCAAAAATTGACAAAAACGAATTTCAATCGAGTAAATATTGACCCGAATTTCCGAATCTTAGCTGATCAAACAGAGA
GTGATTTAATTAGACAAGAAGTCTTTGAACAATTGGTTGAGTCTTATCTATCAGAAGATGATGGATTGAATATTTCAAAA
GAAAAATTTGAAGAACTTATAAAAAATTTTTCTAAAGACAGAAATATTGCTGGTTTTCAAAAAGTGGTTTACACTACTTA
CCGTTTTGCATCAGCAACTGAAAATCCAATAAAGTGGTTAGAAAATCAATTTTTAAAAGGTTTTGAAACATATAAATCAC
TGACAGACTTGTCAGCAGATTTTTCAGCAGATATAAAAGAGAATTTACTTATATTTTTTGAACTTCTAGAAACTTCATTA
ACCAATGGAGTAATTGCTAAAAAAGGGGTTGGACGTGATAAGGCCACTCTTATTTTAGATAACAAAAATGAACTCTTAGA
AGCAATAACCACTAAAGATTTTGCAACTTTCACAGAACTATTTTTATCAATAGATACAGATATTCGAGTGGGTTCTTCAA
AAGATGAAATACTTTCGGCTCTGAAAAAAGATTTTTCAGCACAAAAGCAAGACTTAGTCGGCTCGAAATCCAAACCTGGA
GAAATTCGGAAGTTTGTTGATAAAATAAAACATGGTCAGTTGATTGAAAAATATCAAAATCAAGCATTTGAAATCGCAGA
AAACTTACAAAAATTTGTTATTGAGTTTTACCAAAGTTATTTAGAACGTAAAAAGAATGAAAATGCCTTTGAGTACTCTG
ATATCGCACACTTTGCCATCGAAATTTTAGAGGAAAATCCAGATATACGTGAAACTTTAAGAGAACATTATGATGAAATC
ATGATTGATGAGTATCAGGATACCAGCCACACTCAGGAGCGAATGCTGGAACTTTTATCAAATGGACATAATCTCTTCAT
GGTTGGTGATATTAAGCAATCAATTTATGGCTTTCGTTTAGCTGATCCTGGCCTCTTTTTAGAAAAATATAAAGACTATG
CCAAGACAGAAAATCCAAATCAATTAATTCGCTTAAAAGAAAACTTTCGTTCACGTGGTGAGGTTTTAACATTTACAAAT
GGTATCTTTAAACACCTGATGGATGAAAAATTAGGTGAGATGACTTATGGCAAAGAAGAAGCCTTAGTTCAAGGAAATAT
TACTGATTATCGAGTTGAATCTGAGAAAGATTTTTATCCAGAACTTCTTTTATATAAAGAAAATACAAGTGATGAAGAAA
CAGATGAATCCGAAGTAAGAATTTCGGATGGAGAGATTAAAGGAGCAGCTCAAGAAATAAAAAAATTGATTGAAGCTGGA
GTTGAACCAAAAGATATCGCAATCTTGGTTCGTTCTAAATCAAATAATAATAAAATTGAGGATATTCTGCTTAGTTACGA
TATTCCGGTCGTTCTTGATGAAGGTCGAGTTGATTTTTTGAAATCAATGGAAGTCTTAATTATGCTAGACGTTTTACGAG
CAATTGATAATCCACTCTATGATTTATCATTGGTTGCGATGTTAAGGTCTCCGTTATTTGGATTTAATGAAGATGAATTA
ACTAGAATCAGTACTCAAGGAAGCCATGACCTTCGATTTTGGGATAAAATTCTTTTGTCACTTAATAAAGAAGGACAAAA
TCCAGAACTTATCAATCCTTCCTTAGAGAACAAGCTTAAAGCATTTTATAAGAAGTTTACAGAATGGCGTAAACTTGTAA
ATCAAGTTGCAATTCATGATTTACTTTGGAAAATATATACTGAAACCTACTATTTCGACTATGTTGGTGCCTTAAAAAAT
GGTGAAATGCGTCAAGCGAACTTACAAGCCTTAGCGGTTCGAGCAGAATCATATGAAAGTTCTGGTTATAAAGGATTATT
TAAATTTGTAAGATTAATCAACAAATTTATGGAACAAAATAATGATTTAGCTTCTGTTAATATAAAACTTCCTCAAAATG
CTGTTCGAGTGATGACCTTCCATAAATCAAAAGGATTAGAATTTGATTATGTCTTTTTAATGAATTTACAATCTCGTTTC
AACGATCGTGATTTGAAAGAAGATGTTATCCTAAGTCGTGAAAATGGTTTAGGAATGAAGCTTATTGCTGATTTAAAGGA
TGAAGCAGATGTTATAACTGATTTCCCTTATGCTTTAGTGAAAATGGAAACATTCCCTTATATGGTGAATAAAGACTTAA
AACAAAGAGCAGCTCTTTCAGAAGAAATGCGTGTTTTATATGTTGCATTTACACGAGCAAAGAAAAAACTTTATCTTGTC
GGAAAAATAAAAGAAACAGATAAGAAATCAGGACTTGACCTTTATGATAATGCAAGTTTAGAAGGAAAGATTTTAGAAGA
TAAATTTCGTAATTCAAGTCGCGGTTTTCAACACTGGATATTGGCGCTTCAAAATGCCACAAAACTTCCGATGAAACTCA
ATGTCTACACAAAAGAAGAGTTGGAAGCAGAAAAACTTGAATTTACAAGTCAACCTGATTTCAAAAAATTGGTCGAAGAA
TCGGAAAAATTTGATAATATCATGGCCTATTCTGATGAAATACAAAAAGCTCAAAAAATTATGAATTATGAATATCCAAA
TCAAGCAGCAACAGAGCTTTCAAGTATTCAAACACCAAGTCAGGTTAAAAAACGAAGCTATGAAAAACAATTACAAGTGG
GTGAAATTCAACCGATAAGTGAATTTACTCGGGTCAAAAAGCTAGATTTTTCTGATTTTGGTCCTAAGAAAGTTACTGCT
GCAGAAATCGGTTCGGCAACACATAGTTTTATGCAGTATGCAGATTTTTCTCAAGCAGATTTATTTAGTTTTCAAGCGAC
ACTTGATGAAATGGGATTTGATGAAAAAATAAAAAATCAAATTGATATTGCAAAAATTTTGACTTTGTTTGATACAGATT
TCGGTCAGTTTTTATCAGAAAATGTTGATAAAACAGTTAAAGAAGCAACATTTTCAATGTTGAGAACAGATGAATTTGCT
AAAGAGCAGTATATTGTTCGGGGAATTTGTGATGGATTTGTTAAACTTACTGATAAAATCGTTCTATTTGATTATAAGAC
AGATAGATTTACAAGTTCTTCAGCTATTTCTGAAATAAAAGAGCGTTATAGAGATCAGATGAATCTTTATAGTGAGGCTT
TGAAAAAAGCCTACGATGTCAACCAAGTTGACAAGTATCTCATTTTATTAGGAGGCCCTCAGCAAGTTTTTGTTGAAAAA
CTAGATGATTAG

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(6-453)

UvrD-like helicase C-terminal domain (UvrD_C)

(463-879)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

40.984

100

0.416