Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   QA712_RS05065 Genome accession   NZ_CP121539
Coordinates   905689..906360 (-) Length   223 a.a.
NCBI ID   WP_003132782.1    Uniprot ID   Q9CET7
Organism   Lactococcus lactis strain MA5     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 900689..911360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA712_RS05040 (QA712_05025) pheA 900994..901833 (-) 840 WP_153241515.1 prephenate dehydratase -
  QA712_RS05045 (QA712_05030) - 901835..902323 (-) 489 WP_017864896.1 shikimate kinase -
  QA712_RS05050 (QA712_05035) aroA 902347..903639 (-) 1293 WP_332528955.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  QA712_RS05055 (QA712_05040) - 903760..904824 (-) 1065 WP_010906116.1 prephenate dehydrogenase -
  QA712_RS05060 (QA712_05045) - 904827..905702 (-) 876 WP_003132784.1 HAMP domain-containing sensor histidine kinase -
  QA712_RS05065 (QA712_05050) braR 905689..906360 (-) 672 WP_003132782.1 response regulator transcription factor Regulator
  QA712_RS05070 (QA712_05055) - 906363..907427 (-) 1065 WP_047206651.1 VanZ family protein -
  QA712_RS05075 (QA712_05060) - 907608..909611 (-) 2004 WP_153241518.1 ABC transporter permease -
  QA712_RS05080 (QA712_05065) - 909604..910383 (-) 780 WP_015426921.1 ABC transporter ATP-binding protein -
  QA712_RS05085 (QA712_05070) - 910572..910931 (-) 360 WP_332528954.1 YxeA family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25510.44 Da        Isoelectric Point: 4.8093

>NTDB_id=737286 QA712_RS05065 WP_003132782.1 905689..906360(-) (braR) [Lactococcus lactis strain MA5]
MTKIFIVEDDEIIVKAIKIALEKEFQVRSVSNFRAVKQEIMEFEADLVLMDIGLPFYSGFYWTNELRKLSQIPIIFISSA
SDDMNQVTAMNQGADDFVTKPFSLEILNAKIKALLRRSYSFSGIEKLEFAGYVLSENTLISTQEGEREEIELTSSENKIL
TLLFRGNGEVVTKEKILQELWQTDEFIDANTLNVKMTRLRKKLGEIGFDKHIMTKRGSGYALV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=737286 QA712_RS05065 WP_003132782.1 905689..906360(-) (braR) [Lactococcus lactis strain MA5]
ATGACTAAAATATTTATTGTAGAAGATGATGAAATTATTGTGAAAGCAATTAAGATTGCTCTGGAAAAAGAATTTCAAGT
CAGAAGTGTTTCCAATTTTCGAGCAGTAAAACAAGAAATTATGGAATTTGAAGCAGATTTAGTATTAATGGATATTGGGC
TACCATTTTATAGTGGTTTTTATTGGACAAATGAGTTAAGAAAGCTTTCCCAAATTCCTATTATCTTTATTTCTTCGGCA
TCGGATGACATGAATCAAGTAACCGCCATGAATCAAGGAGCTGATGATTTTGTAACCAAGCCATTTTCATTAGAAATTTT
AAATGCAAAAATAAAAGCTTTATTGCGCAGAAGTTATTCTTTTTCAGGGATTGAAAAGTTAGAATTTGCTGGTTATGTTT
TATCTGAAAATACTTTGATTTCAACTCAAGAAGGTGAACGCGAAGAAATTGAGCTAACAAGTTCTGAAAATAAAATTTTA
ACTCTTCTTTTTCGTGGAAATGGTGAAGTGGTAACCAAGGAAAAAATTCTACAAGAGTTGTGGCAAACAGATGAATTTAT
TGATGCAAATACTTTAAATGTAAAAATGACTCGTTTACGCAAAAAACTTGGTGAAATTGGCTTTGATAAGCATATTATGA
CAAAAAGAGGAAGTGGTTATGCTCTGGTTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-222)

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CET7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.441

99.552

0.413