Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   P9J63_RS16530 Genome accession   NZ_CP121375
Coordinates   3361360..3361794 (-) Length   144 a.a.
NCBI ID   WP_032038531.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LRT     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3356360..3366794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9J63_RS16495 (P9J63_16495) rplS 3356856..3357224 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  P9J63_RS16500 (P9J63_16500) trmD 3357432..3358172 (-) 741 WP_005109350.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  P9J63_RS16505 (P9J63_16505) rimM 3358218..3358766 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  P9J63_RS16510 (P9J63_16510) rpsP 3358786..3359037 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  P9J63_RS16515 (P9J63_16515) - 3359259..3359807 (-) 549 Protein_3221 PilX N-terminal domain-containing pilus assembly protein -
  P9J63_RS16520 (P9J63_16520) pilW 3359804..3360805 (-) 1002 WP_032036669.1 PilW family protein Machinery gene
  P9J63_RS16525 (P9J63_16525) pilV 3360806..3361366 (-) 561 WP_153564561.1 type IV pilus modification protein PilV Machinery gene
  P9J63_RS16530 (P9J63_16530) fimU 3361360..3361794 (-) 435 WP_032038531.1 GspH/FimT family pseudopilin Machinery gene
  P9J63_RS16535 (P9J63_16535) - 3361781..3362527 (+) 747 WP_002122556.1 IS5-like element ISAba31 family transposase -
  P9J63_RS16540 (P9J63_16540) - 3362565..3362693 (-) 129 Protein_3226 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  P9J63_RS16545 (P9J63_16545) ispH 3362863..3363813 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  P9J63_RS16550 (P9J63_16550) gmk 3363936..3364565 (+) 630 WP_000015937.1 guanylate kinase -
  P9J63_RS16555 (P9J63_16555) rpoZ 3364638..3364916 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  P9J63_RS16560 (P9J63_16560) - 3364955..3365085 (+) 131 Protein_3230 hypothetical protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15653.02 Da        Isoelectric Point: 10.5907

>NTDB_id=737250 P9J63_RS16530 WP_032038531.1 3361360..3361794(-) (fimU) [Acinetobacter baumannii strain LRT]
MVRGIANSKIGFGDLILLLRYFFKLKVSTHPNQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPTSLNWQTASNNTLE
LKNIAADGKQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 435 bp        

>NTDB_id=737250 P9J63_RS16530 WP_032038531.1 3361360..3361794(-) (fimU) [Acinetobacter baumannii strain LRT]
ATGGTACGAGGCATAGCGAATAGTAAAATTGGGTTTGGCGATTTGATTTTACTACTTCGCTATTTTTTTAAGCTAAAAGT
GTCAACACACCCTAATCAAAGAGACTTAATCAACACTTTATCAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATG
TTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACTTCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAG
CTAAAAAATATAGCCGCTGATGGTAAGCAAAGTTCTTTAACGACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGC
AAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTAGAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTG
GCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(34-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.115

78.472

0.778