Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FME94_RS03630 Genome accession   NZ_AP019739
Coordinates   919220..920593 (-) Length   457 a.a.
NCBI ID   WP_141418459.1    Uniprot ID   -
Organism   Alistipes communis strain 6CPBBH3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 914220..925593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FME94_RS03620 (A6CPBBH3_07220) - 914700..917819 (+) 3120 WP_162502229.1 efflux RND transporter permease subunit -
  FME94_RS03625 (A6CPBBH3_07230) - 917819..919159 (+) 1341 WP_141418458.1 TolC family protein -
  FME94_RS03630 (A6CPBBH3_07240) radA 919220..920593 (-) 1374 WP_141418459.1 DNA repair protein RadA Machinery gene
  FME94_RS03635 (A6CPBBH3_07250) rseP 920686..922008 (-) 1323 WP_019129974.1 RIP metalloprotease RseP -
  FME94_RS03640 (A6CPBBH3_07260) - 922019..923170 (-) 1152 WP_141418460.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  FME94_RS03645 (A6CPBBH3_07270) - 923200..924063 (-) 864 WP_019129972.1 murein hydrolase activator EnvC -
  FME94_RS03650 (A6CPBBH3_07280) - 924704..925093 (-) 390 WP_019129971.1 hypothetical protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49305.80 Da        Isoelectric Point: 5.9267

>NTDB_id=73719 FME94_RS03630 WP_141418459.1 919220..920593(-) (radA) [Alistipes communis strain 6CPBBH3]
MAKVKKAYFCKECGYEAPKWMGRCPACGEWNTFTEEIVARESGSVPAAITSALPRSTPQRVGEIRSNDRPRLDLGNAEVN
RVLGGGLVPGSLVLLGGEPGIGKSTLSLQIALADNGLKTLYVSGEESAEQIKMRADRIGIGNDTCMVYSETLLENIMAQL
EEQRPDLVIIDSIQTIYTDLVESSAGSVSQIRECAATLLKYAKGSGTSIFIIGHITKEGAIAGPKILEHIVDVVLQFEGD
NNQVYRILRGIKNRFGATFEIGVFEMLDAGLRPVGNPSEILLTHYDAPLSGIAVGASVDGIRPYLIEVQALVSNAAYGTP
QRTATGFDYKRMSMLLAVLEKRVGMKMYTKDVFLNFAGGFKVADPGLDLAIIAAVISSYYDRPIGEGICCAGEVGLSGEV
RPAPRTEQRISEAARLGFRRIVVSGYLPKGAKRPKGIEVVAINSIDQLPRALFINEE

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=73719 FME94_RS03630 WP_141418459.1 919220..920593(-) (radA) [Alistipes communis strain 6CPBBH3]
ATGGCAAAGGTCAAAAAAGCATATTTCTGCAAGGAGTGCGGCTACGAGGCGCCCAAATGGATGGGACGCTGCCCCGCCTG
CGGGGAGTGGAACACCTTCACCGAAGAGATCGTCGCAAGGGAGAGCGGTTCGGTCCCCGCCGCGATAACCTCAGCGCTGC
CCCGCAGCACCCCGCAGCGCGTCGGCGAGATCCGCTCGAACGACCGGCCGCGGCTCGACCTGGGCAACGCCGAGGTCAAC
CGGGTGCTGGGCGGCGGTCTGGTTCCCGGATCGCTCGTGCTGCTGGGCGGCGAACCGGGCATCGGCAAATCGACGCTCAG
CCTGCAAATCGCACTGGCCGACAACGGGTTGAAAACCCTCTACGTCTCGGGCGAGGAGTCGGCCGAGCAGATCAAGATGC
GCGCCGACCGTATCGGCATTGGCAACGACACCTGCATGGTCTACTCCGAGACGCTGCTCGAAAACATCATGGCGCAGCTC
GAAGAGCAGCGCCCCGACCTGGTGATCATCGACTCGATCCAGACGATCTACACCGATCTGGTCGAGTCGTCGGCCGGCAG
CGTGTCGCAGATCCGCGAATGCGCCGCCACGCTGCTCAAATACGCCAAGGGATCGGGCACCTCGATCTTCATCATCGGCC
ACATCACCAAGGAGGGCGCCATCGCCGGCCCGAAGATTCTGGAACACATCGTCGACGTGGTGTTGCAGTTCGAGGGCGAC
AACAATCAGGTTTACCGCATCCTGCGCGGCATCAAGAACCGTTTCGGCGCGACGTTCGAGATCGGCGTCTTCGAGATGCT
CGACGCCGGCCTGCGGCCGGTGGGCAACCCCTCCGAAATCCTGCTCACGCACTACGACGCACCGCTGAGCGGCATCGCCG
TCGGCGCCTCGGTCGACGGTATACGCCCCTACCTGATCGAGGTGCAGGCGCTCGTCTCGAACGCCGCCTACGGCACGCCC
CAGCGCACGGCCACGGGCTTCGACTACAAACGCATGTCGATGCTACTGGCCGTGTTGGAGAAGCGCGTGGGGATGAAGAT
GTACACCAAGGACGTCTTCCTCAACTTCGCGGGCGGCTTCAAGGTCGCCGATCCGGGGCTGGATCTGGCCATCATCGCCG
CCGTAATTTCGTCGTACTACGACCGTCCGATCGGCGAGGGCATCTGCTGCGCGGGCGAAGTCGGGCTTTCGGGCGAGGTG
CGCCCCGCCCCCCGCACCGAGCAGCGCATCAGCGAGGCGGCGCGGCTGGGCTTCCGCCGCATCGTCGTCTCGGGCTACCT
CCCCAAAGGCGCCAAACGCCCCAAAGGCATCGAGGTGGTGGCGATCAACAGCATCGACCAGCTGCCCCGGGCGCTCTTCA
TCAACGAGGAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(78-219)

Subunit ChlI of Mg-chelatase (ChlI)

(341-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.448

99.125

0.49
  radA Streptococcus pneumoniae Rx1

46.476

99.344

0.462
  radA Streptococcus pneumoniae D39

46.476

99.344

0.462
  radA Streptococcus pneumoniae R6

46.476

99.344

0.462
  radA Streptococcus pneumoniae TIGR4

46.476

99.344

0.462
  radA Streptococcus mitis NCTC 12261

46.256

99.344

0.46
  radA Streptococcus mitis SK321

46.256

99.344

0.46

Multiple sequence alignment