Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   P9J61_RS14880 Genome accession   NZ_CP121370
Coordinates   3043429..3043791 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain LRB     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3038429..3048791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9J61_RS14870 (P9J61_14870) - 3040707..3042785 (-) 2079 WP_000505931.1 methyl-accepting chemotaxis protein -
  P9J61_RS14875 (P9J61_14875) - 3042832..3043368 (-) 537 WP_000729762.1 chemotaxis protein CheW -
  P9J61_RS14880 (P9J61_14880) pilH 3043429..3043791 (-) 363 WP_000101096.1 response regulator Machinery gene
  P9J61_RS14885 (P9J61_14885) pilG 3043815..3044198 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  P9J61_RS14890 (P9J61_14890) - 3044481..3045119 (+) 639 WP_004739833.1 hypothetical protein -
  P9J61_RS14895 (P9J61_14895) - 3045179..3046297 (+) 1119 WP_001260815.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=737172 P9J61_RS14880 WP_000101096.1 3043429..3043791(-) (pilH) [Acinetobacter baumannii strain LRB]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=737172 P9J61_RS14880 WP_000101096.1 3043429..3043791(-) (pilH) [Acinetobacter baumannii strain LRB]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392