Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   P9J61_RS07700 Genome accession   NZ_CP121370
Coordinates   1577498..1578133 (+) Length   211 a.a.
NCBI ID   WP_032036390.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LRB     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1572498..1583133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9J61_RS07675 (P9J61_07675) - 1573338..1574351 (+) 1014 WP_001096106.1 phosphotransferase -
  P9J61_RS07680 (P9J61_07680) murU 1574351..1575040 (+) 690 WP_032036389.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  P9J61_RS07685 (P9J61_07685) rsmG 1575128..1575760 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  P9J61_RS07690 (P9J61_07690) - 1575782..1576564 (+) 783 WP_000057212.1 ParA family protein -
  P9J61_RS07695 (P9J61_07695) - 1576561..1577448 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  P9J61_RS07700 (P9J61_07700) exbB 1577498..1578133 (+) 636 WP_032036390.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  P9J61_RS07705 (P9J61_07705) - 1578149..1578577 (+) 429 WP_000669684.1 biopolymer transporter ExbD -
  P9J61_RS07710 (P9J61_07710) msbA 1578574..1580301 (+) 1728 WP_001070723.1 lipid A export permease/ATP-binding protein MsbA -
  P9J61_RS07715 (P9J61_07715) lpxK 1580304..1581314 (+) 1011 WP_032036391.1 tetraacyldisaccharide 4'-kinase -
  P9J61_RS07720 (P9J61_07720) kdsB 1581324..1582085 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  P9J61_RS07725 (P9J61_07725) - 1582097..1583077 (+) 981 WP_001075412.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23232.12 Da        Isoelectric Point: 6.4861

>NTDB_id=737152 P9J61_RS07700 WP_032036390.1 1577498..1578133(+) (exbB) [Acinetobacter baumannii strain LRB]
MWELVKAGGWLMLPLILCSILTVAFSIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=737152 P9J61_RS07700 WP_032036390.1 1577498..1578133(+) (exbB) [Acinetobacter baumannii strain LRB]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCATTTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCACCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTGATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

42.932

90.521

0.389