Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NDS46_RS25740 Genome accession   NZ_CP106992
Coordinates   5652244..5653197 (-) Length   317 a.a.
NCBI ID   WP_087444499.1    Uniprot ID   -
Organism   Paenibacillus thiaminolyticus strain SY20     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5647244..5658197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDS46_RS25720 (NDS46_25750) - 5648235..5649035 (+) 801 WP_272046961.1 WYL domain-containing protein -
  NDS46_RS25725 (NDS46_25755) - 5649468..5650430 (-) 963 WP_272046962.1 siderophore ABC transporter substrate-binding protein -
  NDS46_RS25730 (NDS46_25760) - 5650552..5651310 (-) 759 WP_272046963.1 ABC transporter ATP-binding protein -
  NDS46_RS25735 (NDS46_25765) - 5651304..5652254 (-) 951 WP_272046964.1 iron chelate uptake ABC transporter family permease subunit -
  NDS46_RS25740 (NDS46_25770) ceuB 5652244..5653197 (-) 954 WP_087444499.1 ABC transporter permease Machinery gene
  NDS46_RS25745 (NDS46_25775) - 5653662..5654846 (-) 1185 WP_272050087.1 dicarboxylate/amino acid:cation symporter -
  NDS46_RS25750 (NDS46_25780) - 5655031..5655300 (-) 270 WP_272046965.1 YqkE family protein -
  NDS46_RS25755 (NDS46_25785) - 5655547..5656101 (+) 555 WP_272046966.1 PadR family transcriptional regulator -
  NDS46_RS25760 (NDS46_25790) - 5656114..5656587 (+) 474 WP_272046967.1 DUF4188 domain-containing protein -
  NDS46_RS25765 (NDS46_25795) infC 5656646..5657134 (-) 489 WP_272046968.1 translation initiation factor IF-3 -
  NDS46_RS25770 (NDS46_25800) - 5657198..5657530 (+) 333 WP_143802225.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35237.63 Da        Isoelectric Point: 10.1878

>NTDB_id=737010 NDS46_RS25740 WP_087444499.1 5652244..5653197(-) (ceuB) [Paenibacillus thiaminolyticus strain SY20]
MKKRYLVIALILFAFISLFIGVIDIKPWDLFNLNDDKVHTFLVSRVPRLISIILAGVSMSICGLIMQQLSRNKFVSPTTA
GTLDSARLGILVSLMLFTTASPLVKMLVAFVFALAGTMLFMKILDRIKFKDTIFIPLVGLMFGNIISSISTFFAYKYDLI
QNMSSWLQGDFSMIIKGRYELLYISIPLLVIAYLYANKFTVAGMGEDFSKNLGLNYKRVVNIGLILVALVTCTVVLTVGT
IPFLGLIIPNIVSIYRGDNLKNSLSHTALLGAVFVLFCDILGRIIIFPYELSISLTVGVIGSAIFVYMLMRRRAHGL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=737010 NDS46_RS25740 WP_087444499.1 5652244..5653197(-) (ceuB) [Paenibacillus thiaminolyticus strain SY20]
ATGAAGAAGAGATATCTGGTTATTGCGCTTATCCTGTTTGCCTTCATTTCCCTTTTTATCGGGGTCATAGACATTAAGCC
GTGGGATTTGTTCAATCTGAACGACGACAAGGTTCATACTTTTCTCGTCAGCCGGGTGCCAAGGCTTATCAGTATCATTC
TCGCCGGGGTCAGCATGAGTATATGCGGCCTGATTATGCAGCAGCTTAGCCGGAACAAGTTCGTCTCGCCCACGACGGCA
GGAACGCTTGACTCGGCCCGCTTGGGGATACTCGTCTCTTTGATGCTGTTCACGACCGCGAGCCCGTTGGTGAAGATGCT
CGTTGCGTTCGTCTTCGCTTTGGCAGGCACGATGCTGTTCATGAAGATATTGGATCGCATCAAATTCAAAGACACCATCT
TCATTCCGCTCGTCGGATTGATGTTTGGCAATATTATTAGTTCCATTTCCACCTTTTTTGCATATAAGTATGATTTGATT
CAGAACATGTCCTCGTGGCTGCAGGGCGACTTCTCGATGATTATTAAGGGGCGCTATGAGCTGCTGTATATCAGCATTCC
GCTTCTCGTGATTGCATACCTGTATGCGAACAAGTTCACGGTAGCAGGGATGGGCGAGGATTTCTCGAAGAACCTCGGGC
TCAACTACAAGCGCGTGGTCAACATCGGCTTGATCCTGGTGGCGCTCGTTACGTGCACGGTCGTGCTTACCGTTGGAACG
ATTCCTTTCCTGGGTCTCATTATCCCGAATATCGTTTCCATTTACCGAGGCGATAATTTGAAGAATAGCTTGTCGCATAC
CGCGCTTCTCGGGGCCGTATTCGTTCTGTTCTGCGATATTTTGGGACGCATCATCATCTTCCCGTATGAATTGTCGATCA
GCTTGACGGTCGGCGTCATCGGAAGTGCCATATTCGTCTATATGTTAATGAGGAGAAGGGCACATGGGTTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.355

98.738

0.527