Detailed information NTG0736986

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P9060_RS05475
• Genome accession: NZ_CP121356
• Coordinates: 1121308..1122300 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain rl0044
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1116308..1127300

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P9060_RS05445 (P9060_05445)	ispD	1116369..1117079 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
P9060_RS05450 (P9060_05450)	ispF	1117079..1117558 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P9060_RS05455 (P9060_05455)	truD	1117555..1118604 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
P9060_RS05460 (P9060_05460)	surE	1118585..1119346 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
P9060_RS05465 (P9060_05465)	pcm	1119340..1119966 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
P9060_RS05470 (P9060_05470)	nlpD	1120151..1121245 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
P9060_RS05475 (P9060_05475)	rpoS	1121308..1122300 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
P9060_RS05480 (P9060_05480)	ygbN	1122394..1123758 (-)	1365	WP_000104429.1	GntP family transporter	-
P9060_RS05485 (P9060_05485)	ygbM	1123847..1124623 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
P9060_RS05490 (P9060_05490)	ygbL	1124628..1125266 (-)	639	WP_001278994.1	aldolase	-
P9060_RS05495 (P9060_05495)	otnK	1125263..1126525 (-)	1263	WP_000590404.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=736986 P9060_RS05475 WP_000081550.1 1121308..1122300(+) (rpoS) [Escherichia coli strain rl0044]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=736986 P9060_RS05475 WP_000081550.1 1121308..1122300(+) (rpoS) [Escherichia coli strain rl0044]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715