Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FMF02_RS09790 Genome accession   NZ_AP019735
Coordinates   2395358..2396731 (-) Length   457 a.a.
NCBI ID   WP_141413016.1    Uniprot ID   -
Organism   Alistipes communis strain 5CBH24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2390358..2401731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FMF02_RS09780 (A5CBH24_19230) - 2390837..2393959 (+) 3123 WP_162502323.1 efflux RND transporter permease subunit -
  FMF02_RS09785 (A5CBH24_19240) - 2393956..2395296 (+) 1341 WP_141413015.1 TolC family protein -
  FMF02_RS09790 (A5CBH24_19250) radA 2395358..2396731 (-) 1374 WP_141413016.1 DNA repair protein RadA Machinery gene
  FMF02_RS09795 (A5CBH24_19260) rseP 2396824..2398146 (-) 1323 WP_019129974.1 RIP metalloprotease RseP -
  FMF02_RS09800 (A5CBH24_19270) - 2398157..2399308 (-) 1152 WP_141413017.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  FMF02_RS09805 (A5CBH24_19280) - 2399338..2400201 (-) 864 WP_019129972.1 murein hydrolase activator EnvC family protein -
  FMF02_RS09810 (A5CBH24_19290) - 2400992..2401381 (-) 390 WP_019129971.1 hypothetical protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49279.78 Da        Isoelectric Point: 5.9267

>NTDB_id=73698 FMF02_RS09790 WP_141413016.1 2395358..2396731(-) (radA) [Alistipes communis strain 5CBH24]
MAKVKKAYFCKECGYEAPKWMGRCPACGEWNSFTEEIVARESGSVPAAMTSALPRSTPQRVGEIRSNDRPRLDLGNAEVN
RVLGGGLVPGSLVLLGGEPGIGKSTLSLQIALADNGLKTLYVSGEESAEQIKMRADRIGIGNDACMVYSETLLENIMAQL
EEQRPDLVIIDSIQTIYTDLVESSAGSVSQIRECAATLLKYAKGSGTSIFIIGHITKEGAIAGPKILEHIVDVVLQFEGD
NNQVYRILRGIKNRFGATFEIGVFEMLDAGLRPVGNPSEILLTHYDAPLSGIAVGASVDGIRPYLIEVQALVSNAAYGTP
QRTATGFDYKRMSMLLAVLEKRVGMKMYTKDVFLNFAGGFKVADPGLDLAIIAAVISSYYDRPIGEGICCAGEVGLSGEV
RPAPRTEQRISEAARLGFRRIVVSGYLPKGAKRPKGIEVVAINSIDQLPRALFINEE

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=73698 FMF02_RS09790 WP_141413016.1 2395358..2396731(-) (radA) [Alistipes communis strain 5CBH24]
ATGGCAAAGGTCAAAAAAGCATATTTCTGCAAGGAGTGCGGCTACGAGGCGCCCAAATGGATGGGACGCTGCCCCGCCTG
TGGGGAGTGGAACTCCTTCACCGAAGAGATCGTCGCAAGGGAGAGCGGTTCGGTCCCCGCCGCGATGACCTCGGCGCTGC
CCCGCAGCACCCCGCAGCGCGTCGGCGAGATCCGCTCGAACGACCGGCCGCGGCTCGACCTGGGCAACGCCGAGGTCAAC
CGGGTGCTGGGCGGCGGTCTGGTTCCCGGATCGCTCGTGCTGCTGGGCGGCGAACCGGGCATCGGCAAATCGACGCTCAG
CCTGCAAATCGCACTGGCCGACAACGGGTTGAAAACCCTCTACGTCTCGGGTGAGGAGTCGGCCGAGCAGATCAAGATGC
GCGCCGACCGTATCGGCATCGGCAACGACGCCTGCATGGTCTACTCCGAGACGCTGCTCGAAAACATCATGGCGCAGCTC
GAAGAGCAGCGCCCCGACCTGGTGATCATCGACTCGATCCAGACGATCTACACCGATCTGGTCGAGTCGTCGGCCGGCAG
CGTGTCGCAGATCCGCGAATGCGCCGCCACGCTGCTCAAATACGCCAAGGGATCGGGCACCTCGATCTTCATCATCGGCC
ACATCACCAAGGAGGGCGCCATCGCCGGCCCGAAGATTCTGGAACACATCGTCGACGTGGTGTTGCAGTTCGAGGGCGAC
AACAATCAGGTTTACCGCATCCTGCGCGGCATCAAGAACCGTTTCGGCGCGACGTTCGAGATCGGTGTCTTCGAGATGCT
CGACGCCGGCCTGCGGCCGGTGGGCAACCCCTCCGAAATCCTGCTCACGCACTACGACGCACCGCTGAGCGGCATCGCCG
TCGGCGCCTCGGTCGACGGCATACGCCCCTACCTGATCGAGGTGCAGGCGCTCGTCTCGAACGCCGCCTACGGCACGCCC
CAGCGCACGGCCACGGGCTTCGACTACAAACGCATGTCGATGCTGCTGGCCGTGTTGGAGAAGCGCGTGGGGATGAAGAT
GTACACCAAGGACGTCTTCCTCAACTTCGCGGGCGGCTTCAAAGTAGCCGATCCGGGGCTGGATCTGGCCATCATCGCCG
CCGTAATTTCGTCGTACTACGACCGTCCGATCGGCGAGGGCATCTGCTGCGCGGGCGAAGTAGGCCTTTCGGGCGAGGTG
CGCCCCGCCCCCCGCACCGAGCAGCGCATCAGCGAGGCGGCGCGGCTGGGCTTCCGCCGCATCGTCGTCTCGGGCTACCT
CCCCAAAGGCGCCAAACGCCCCAAAGGCATCGAGGTGGTGGCGATCAACAGCATCGACCAGCTGCCCCGGGCGCTCTTCA
TCAACGAGGAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(341-424)

AAA domain (AAA_25)

(78-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.119

99.344

0.488
  radA Streptococcus pneumoniae Rx1

46.696

99.344

0.464
  radA Streptococcus pneumoniae D39

46.696

99.344

0.464
  radA Streptococcus pneumoniae R6

46.696

99.344

0.464
  radA Streptococcus pneumoniae TIGR4

46.696

99.344

0.464
  radA Streptococcus mitis NCTC 12261

46.476

99.344

0.462
  radA Streptococcus mitis SK321

46.476

99.344

0.462

Multiple sequence alignment