Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   OF864_RS10550 Genome accession   NZ_CP106987
Coordinates   2097252..2097575 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus cereus strain IBA1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2092252..2102575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OF864_RS10525 (OF864_10530) - 2092542..2093828 (+) 1287 WP_000247029.1 D-alanyl-D-alanine carboxypeptidase family protein -
  OF864_RS10530 (OF864_10535) - 2094019..2094588 (+) 570 WP_000767792.1 signal peptidase I -
  OF864_RS10535 (OF864_10540) - 2094649..2095236 (+) 588 WP_000172854.1 CalY family protein -
  OF864_RS10540 (OF864_10545) - 2095371..2096195 (+) 825 WP_283503074.1 DUF4047 domain-containing protein -
  OF864_RS10545 (OF864_10550) calY 2096583..2097176 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  OF864_RS10550 (OF864_10555) sinR 2097252..2097575 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  OF864_RS10555 (OF864_10560) - 2097655..2097789 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  OF864_RS10560 (OF864_10565) inhA1 2098132..2100522 (+) 2391 WP_001035944.1 M6 family metalloprotease immune inhibitor InhA1 -
  OF864_RS10565 (OF864_10570) - 2100694..2102061 (+) 1368 WP_000028381.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=736912 OF864_RS10550 WP_000578885.1 2097252..2097575(-) (sinR) [Bacillus cereus strain IBA1]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=736912 OF864_RS10550 WP_000578885.1 2097252..2097575(-) (sinR) [Bacillus cereus strain IBA1]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692