Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   P9N54_RS23020 Genome accession   NZ_CP121294
Coordinates   4728929..4730449 (-) Length   506 a.a.
NCBI ID   WP_000058976.1    Uniprot ID   -
Organism   Escherichia coli O155:H21 strain NWU_1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4723929..4735449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9N54_RS22980 (P9N54_22980) - 4724126..4724827 (-) 702 WP_137455743.1 replication protein P -
  P9N54_RS22985 (P9N54_22985) - 4724824..4725843 (-) 1020 WP_170977186.1 replication protein -
  P9N54_RS22990 (P9N54_22990) - 4725840..4726379 (-) 540 WP_136721133.1 toxin YdaT domain-containing protein -
  P9N54_RS22995 (P9N54_22995) - 4726410..4726637 (-) 228 WP_000184665.1 helix-turn-helix domain-containing protein -
  P9N54_RS23000 (P9N54_23000) - 4726748..4727353 (+) 606 Protein_4539 helix-turn-helix transcriptional regulator -
  P9N54_RS23010 (P9N54_23010) hdfR 4727608..4728447 (-) 840 WP_000379246.1 HTH-type transcriptional regulator HdfR -
  P9N54_RS23015 (P9N54_23015) maoP 4728566..4728904 (+) 339 WP_000841001.1 macrodomain Ori organization protein MaoP -
  P9N54_RS23020 (P9N54_23020) comM 4728929..4730449 (-) 1521 WP_000058976.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  P9N54_RS23025 (P9N54_23025) ilvL 4730802..4730900 (+) 99 WP_001311244.1 ilv operon leader peptide -
  P9N54_RS23030 (P9N54_23030) ilvX 4730987..4731037 (+) 51 WP_001387183.1 peptide IlvX -
  P9N54_RS23035 (P9N54_23035) ilvG 4731040..4732686 (+) 1647 WP_001012633.1 acetolactate synthase 2 catalytic subunit -
  P9N54_RS23040 (P9N54_23040) ilvM 4732683..4732946 (+) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  P9N54_RS23045 (P9N54_23045) ilvE 4732966..4733895 (+) 930 WP_000208520.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55132.33 Da        Isoelectric Point: 7.6191

>NTDB_id=736888 P9N54_RS23020 WP_000058976.1 4728929..4730449(-) (comM) [Escherichia coli O155:H21 strain NWU_1]
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHL
QAVCAFLEGKHALERPKPTDAVSRALQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPG
ESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAMWLEGTLIHLGLSIRAWQRLLKVARTIADIDQSDII
TRQHLQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=736888 P9N54_RS23020 WP_000058976.1 4728929..4730449(-) (comM) [Escherichia coli O155:H21 strain NWU_1]
ATGTCACTGTCAATTGTTCATACCCGCGCAGCCCTGGGAGTAAATGCGCCCCCAATCACTGTTGAGGTACATATCAGTAA
AGGTCTACCCGGCTTAACGATGGTGGGCTTACCAGAAACAACTGTAAAAGAAGCTCGCGATCGCGTGCGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACCATCAACCTGGCTCCAGCCGATCTGCCAAAAGAAGGGGGACGA
TATGATTTACCTATCGCCATTGCGTTGCTGGCGGCCTCAGAACAGCTTACAGCCAATAAGTTAGATGAATATGAATTAGT
CGGAGAACTGGCGCTTACAGGCGCTCTGCGTGGCGTTCCCGGCGCAATCTCCAGTGCAACTGAAGCTATTAAGTCGGGCA
GAAAAATTATCGTCGCGAAAGATAACGAAGATGAAGTGGGGCTAATTAACGGTGAAGGATGCCTGATAGCCGATCATCTG
CAGGCTGTCTGTGCGTTTCTGGAAGGTAAGCACGCTCTCGAACGCCCGAAACCAACTGATGCAGTATCCCGGGCGCTACA
ACATGATCTCAGTGATGTTGTCGGTCAGGAGCAAGGAAAGCGAGGACTGGAAATTACCGCCGCTGGCGGGCACAACCTTT
TACTGATTGGGCCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTGTTGCCAGATTTAAGCAATGAA
GAGGCACTGGAGAGCGCTGCGATATTAAGTCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGCCCGTTCCG
CTCACCGCATCACAGTGCGTCGTTAACTGCGATGGTGGGCGGTGGTGCAATTCCAGGGCCAGGTGAAATTTCGTTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAGCTACCTGAATTTGAACGGCGTACACTGGATGCCTTGCGAGAGCCGATTGAATCC
GGGCAGATCCATCTTTCACGCACACGAGCCAAAATAACCTATCCAGCCCGTTTCCAGCTTGTTGCGGCGATGAATCCCAG
CCCTACCGGACATTATCAGGGAAACCATAACCGCTGCACGCCAGAACAGACATTACGTTATCTCAACCGGCTCTCGGGGC
CCTTTCTCGACCGCTTCGATCTCTCACTGGAGATCCCATTACCACCCCCCGGCATTTTGAGTAAAACGGTAGTGCCGGGA
GAAAGCAGCGCCACCGTTAAACAACGCGTAATGGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAACTGAATGCCTG
GCTGGATAGTCCGGAAATACGCCAATTCTGCAAACTTGAGAGCGAAGATGCGATGTGGTTGGAAGGAACACTGATCCATC
TGGGGTTATCGATTCGTGCCTGGCAGCGGTTATTGAAAGTTGCACGAACCATTGCTGATATTGATCAGTCTGACATTATC
ACACGTCAGCATTTGCAGGAGGCAGTTAGCTATCGTGCGATTGACCGTTTGCTCATCCATCTGCAAAAACTACTGACATA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.708

100

0.593
  comM Vibrio cholerae O1 biovar El Tor strain E7946

59.363

99.209

0.589
  comM Vibrio cholerae strain A1552

59.363

99.209

0.589
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Vibrio campbellii strain DS40M4

58.167

99.209

0.577
  comM Acinetobacter baylyi ADP1

48.996

98.419

0.482
  comM Legionella pneumophila str. Paris

47.992

98.419

0.472
  comM Legionella pneumophila strain ERS1305867

47.992

98.419

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.269

100

0.443