Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   OF864_RS00745 Genome accession   NZ_CP106987
Coordinates   169634..169915 (-) Length   93 a.a.
NCBI ID   WP_050845507.1    Uniprot ID   A0A9X6JQH5
Organism   Bacillus cereus strain IBA1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 164634..174915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OF864_RS00710 (OF864_00715) - 165512..165706 (+) 195 WP_283502821.1 hypothetical protein -
  OF864_RS00715 (OF864_00720) - 165852..165998 (-) 147 WP_283502822.1 Blp family class II bacteriocin -
  OF864_RS00720 (OF864_00725) - 166229..166873 (-) 645 Protein_144 recombinase family protein -
  OF864_RS00725 (OF864_00730) - 167202..167501 (+) 300 WP_283503167.1 hypothetical protein -
  OF864_RS00730 (OF864_00735) - 167613..167945 (+) 333 WP_000448097.1 hypothetical protein -
  OF864_RS00735 (OF864_00740) - 168235..168828 (+) 594 WP_144490002.1 TasA family protein -
  OF864_RS00740 (OF864_00745) hfq 169379..169612 (-) 234 WP_283502823.1 RNA chaperone Hfq -
  OF864_RS00745 (OF864_00750) abrB 169634..169915 (-) 282 WP_050845507.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  OF864_RS00750 (OF864_00755) - 170041..170346 (-) 306 WP_283502824.1 metalloregulator ArsR/SmtB family transcription factor -
  OF864_RS00755 (OF864_00760) - 170462..171046 (-) 585 Protein_151 hypothetical protein -
  OF864_RS00760 (OF864_00765) - 171529..174506 (+) 2978 Protein_152 Tn3 family transposase -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10281.99 Da        Isoelectric Point: 8.0020

>NTDB_id=736886 OF864_RS00745 WP_050845507.1 169634..169915(-) (abrB) [Bacillus cereus strain IBA1]
MKATGIVRKVDNLGRIVIPKETRKTLQVETSDALEFFVEEDAIVLQKYTPHGTCPITGEISSRNVKLVGGKLTLSPEGLK
QLLAELEQYKVTV

Nucleotide


Download         Length: 282 bp        

>NTDB_id=736886 OF864_RS00745 WP_050845507.1 169634..169915(-) (abrB) [Bacillus cereus strain IBA1]
ATGAAAGCAACAGGTATTGTACGAAAAGTAGATAATTTGGGACGAATTGTAATACCAAAAGAAACAAGAAAAACTTTACA
GGTGGAAACAAGCGATGCTTTAGAATTTTTTGTAGAAGAAGATGCGATTGTTTTACAAAAATATACACCTCATGGTACTT
GTCCTATCACAGGAGAAATATCTTCAAGGAATGTAAAACTAGTAGGTGGAAAGCTGACATTGAGTCCAGAGGGTCTAAAA
CAACTGTTAGCTGAACTAGAACAATACAAAGTGACTGTATGA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.682

94.624

0.527