Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OCU08_RS17235 Genome accession   NZ_CP106964
Coordinates   3544114..3544710 (-) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola strain SY1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3539114..3549710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU08_RS17220 helD 3539322..3541376 (-) 2055 WP_049139374.1 DNA helicase IV -
  OCU08_RS17225 - 3541501..3541947 (+) 447 WP_012542294.1 YccF domain-containing protein -
  OCU08_RS17230 yccS 3541965..3544100 (+) 2136 WP_008805895.1 YccS family putative transporter -
  OCU08_RS17235 sxy/tfoX 3544114..3544710 (-) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  OCU08_RS17240 sulA 3545061..3545570 (+) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  OCU08_RS17245 ompA 3545923..3546975 (+) 1053 WP_008805892.1 porin OmpA -
  OCU08_RS17250 matP 3547086..3547538 (-) 453 WP_008805891.1 macrodomain Ter protein MatP -
  OCU08_RS17255 - 3547724..3549481 (+) 1758 WP_094284866.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=736863 OCU08_RS17235 WP_012542296.1 3544114..3544710(-) (sxy/tfoX) [Klebsiella variicola strain SY1]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=736863 OCU08_RS17235 WP_012542296.1 3544114..3544710(-) (sxy/tfoX) [Klebsiella variicola strain SY1]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCAGGAGCCCGTTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505