Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OCT50_RS07530 Genome accession   NZ_CP106959
Coordinates   1638377..1639003 (+) Length   208 a.a.
NCBI ID   WP_032617404.1    Uniprot ID   A0A4U9HRJ8
Organism   Leclercia adecarboxylata strain 17YN198     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1633377..1644003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCT50_RS07510 (OCT50_07510) - 1633774..1635534 (-) 1761 WP_032617399.1 Lon protease family protein -
  OCT50_RS07515 (OCT50_07515) matP 1635721..1636176 (+) 456 WP_032617400.1 macrodomain Ter protein MatP -
  OCT50_RS07520 (OCT50_07520) ompA 1636243..1637295 (-) 1053 WP_112300445.1 porin OmpA -
  OCT50_RS07525 (OCT50_07525) sulA 1637650..1638159 (-) 510 WP_032617403.1 SOS-induced cell division inhibitor SulA -
  OCT50_RS07530 (OCT50_07530) sxy/tfoX 1638377..1639003 (+) 627 WP_032617404.1 TfoX/Sxy family DNA transformation protein Regulator
  OCT50_RS07535 (OCT50_07535) yccS 1638988..1641123 (-) 2136 WP_032617405.1 YccS family putative transporter -
  OCT50_RS07540 (OCT50_07540) - 1641142..1641588 (-) 447 WP_032617407.1 YccF domain-containing protein -
  OCT50_RS07545 (OCT50_07545) helD 1641712..1643766 (+) 2055 WP_270735885.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23820.39 Da        Isoelectric Point: 9.3562

>NTDB_id=736832 OCT50_RS07530 WP_032617404.1 1638377..1639003(+) (sxy/tfoX) [Leclercia adecarboxylata strain 17YN198]
MKKLSYERIYQSTKYLSPLGEVQHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAPYCAKNTTSYLTLMKRGRAVLLN
YYRVDEALWQDQNKLLQLSSLALEAARRERRERYKRDRLKDLPNLNFQLEILLNEAGITNEAALRALGAEQSWLKIRALN
KHLSYKVLFALEGAIVGLHEAALPALRRRELVEWYKTLPVENSPHSGS

Nucleotide


Download         Length: 627 bp        

>NTDB_id=736832 OCT50_RS07530 WP_032617404.1 1638377..1639003(+) (sxy/tfoX) [Leclercia adecarboxylata strain 17YN198]
ATGAAAAAGTTATCCTACGAGCGGATCTATCAATCCACGAAATATCTTTCACCCCTCGGAGAGGTCCAGCATCGCGCCCT
GTTTGGCGGATACACATTGGCGGTGGATGACGCAGTCTTTGCGATGGTGTCAGATGGGGAGTTGTACCTGCGTGCCTGTG
AAGAGAGCGCACCGTATTGCGCCAAAAATACCACCTCTTATCTGACGCTGATGAAGCGGGGGCGCGCGGTATTGCTGAAT
TATTACCGTGTCGATGAGGCGCTCTGGCAGGATCAGAATAAGCTTTTACAGCTCTCTTCACTTGCTCTCGAAGCCGCGCG
GCGGGAGCGCCGTGAGCGGTACAAACGCGACAGGTTGAAAGATTTACCCAATCTCAACTTTCAGCTTGAGATTTTGCTGA
ATGAGGCGGGCATCACCAACGAAGCAGCATTACGCGCCCTCGGTGCTGAGCAGAGCTGGCTGAAGATCAGAGCGCTTAAC
AAGCATCTGAGTTACAAAGTGCTGTTTGCGCTGGAGGGGGCGATAGTGGGGCTGCATGAAGCAGCGCTCCCGGCGCTCAG
GCGCCGGGAGCTGGTGGAGTGGTACAAAACGCTACCGGTAGAGAACAGTCCTCACTCAGGCAGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U9HRJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.561

98.558

0.567