Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   P8R49_RS21220 Genome accession   NZ_CP121266
Coordinates   3967728..3968417 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain 107105     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3962728..3973417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R49_RS21200 (P8R49_21200) yxeA 3963657..3964004 (-) 348 WP_003227084.1 YxeA family protein -
  P8R49_RS21205 (P8R49_21205) yxdM 3964018..3965902 (-) 1885 Protein_4118 ABC transporter permease YxdM -
  P8R49_RS21210 (P8R49_21210) tpeL 3965877..3966610 (-) 734 Protein_4119 ABC transporter ATP-binding protein -
  P8R49_RS21215 (P8R49_21215) yxdK 3966754..3967731 (-) 978 WP_014481410.1 two-component system sensor histidine kinase YxdK -
  P8R49_RS21220 (P8R49_21220) braR 3967728..3968417 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  P8R49_RS21225 (P8R49_21225) iolJ 3968525..3969397 (-) 873 WP_014481411.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  P8R49_RS21230 (P8R49_21230) iolI 3969418..3970254 (-) 837 WP_014481412.1 2-keto-myo-inositol isomerase -
  P8R49_RS21235 (P8R49_21235) iolH 3970340..3971209 (-) 870 WP_014481413.1 sugar phosphate isomerase/epimerase -
  P8R49_RS21240 (P8R49_21240) iolG 3971229..3972263 (-) 1035 WP_014481414.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=736804 P8R49_RS21220 WP_003243527.1 3967728..3968417(-) (braR) [Bacillus subtilis strain 107105]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=736804 P8R49_RS21220 WP_003243527.1 3967728..3968417(-) (braR) [Bacillus subtilis strain 107105]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATACCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406