Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   N7L95_RS16375 Genome accession   NZ_CP106951
Coordinates   3690661..3692028 (-) Length   455 a.a.
NCBI ID   WP_301256324.1    Uniprot ID   -
Organism   Eleftheria terrae strain P9846-PB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3685661..3697028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7L95_RS16340 (N7L95_16365) - 3686150..3686356 (-) 207 WP_301256317.1 zinc-finger domain-containing protein -
  N7L95_RS16345 (N7L95_16370) - 3686378..3687301 (-) 924 WP_301256318.1 branched-chain amino acid transaminase -
  N7L95_RS16350 (N7L95_16375) - 3687480..3688232 (+) 753 WP_301256319.1 hypothetical protein -
  N7L95_RS16355 (N7L95_16380) - 3688251..3688646 (-) 396 WP_301256320.1 hypothetical protein -
  N7L95_RS16360 (N7L95_16385) - 3688731..3689528 (-) 798 WP_301256321.1 metallophosphoesterase family protein -
  N7L95_RS16365 (N7L95_16390) - 3689584..3689916 (-) 333 WP_301256322.1 antibiotic biosynthesis monooxygenase -
  N7L95_RS16370 (N7L95_16395) - 3690052..3690582 (+) 531 WP_301256323.1 hypothetical protein -
  N7L95_RS16375 (N7L95_16400) radA 3690661..3692028 (-) 1368 WP_301256324.1 DNA repair protein RadA Machinery gene
  N7L95_RS16380 (N7L95_16405) - 3692060..3692548 (-) 489 WP_301256325.1 acyl-CoA thioesterase -
  N7L95_RS16385 (N7L95_16410) - 3692680..3693009 (-) 330 WP_301256326.1 DUF2917 domain-containing protein -
  N7L95_RS16390 (N7L95_16415) - 3693270..3694784 (+) 1515 WP_301256327.1 PLP-dependent aminotransferase family protein -
  N7L95_RS16395 (N7L95_16420) alr 3694881..3695981 (-) 1101 WP_301256328.1 alanine racemase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48135.55 Da        Isoelectric Point: 7.2044

>NTDB_id=736800 N7L95_RS16375 WP_301256324.1 3690661..3692028(-) (radA) [Eleftheria terrae strain P9846-PB]
MAKEKTVYTCSECGGTSPKWLGKCPHCNAWNTLEETVAEGGSRQHRFQALAKSAPVASLGDIEAVDIARTPTGIDELDRV
LGGGMVPGGVVLIGGDPGIGKSTLLLQALDALSQHMKALYVTGEESGAQVALRARRLGLDGSRVRVQAEIQLEKILATVE
AEKPAVAVIDSIQTVYSEQLTSAPGSVAQVRECSAQLTRTAKATGTSMVLVGHVTKEGALAGPRVLEHIVDTVLYFEGDT
HSAFRLVRAFKNRFGAVNEIGVFAMTERGLKGVANPSAIFLSTHGEPVPGSCVLVTLEGTRPMLVEVQALVDSSPIPSPR
RLSVGLEQNRLAMLLAVMHRHAGIACFDQDVFVNAVGGVRISEPAADLAVMLAIQSSLRGRPLPRGFLTFGEVGLAGEVR
PAPRGQERLKEAAKLGFGIAVVPKANVPKKPIEGLEIHAVERVEQAIDLVRELAA

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=736800 N7L95_RS16375 WP_301256324.1 3690661..3692028(-) (radA) [Eleftheria terrae strain P9846-PB]
ATGGCGAAAGAAAAGACGGTCTACACCTGCAGCGAATGCGGCGGCACCAGCCCCAAGTGGCTGGGCAAGTGCCCGCACTG
CAATGCCTGGAACACGCTGGAAGAAACGGTGGCCGAGGGCGGCAGCCGCCAGCACCGCTTCCAGGCGCTGGCGAAGTCGG
CCCCGGTGGCCAGCCTCGGCGACATCGAGGCGGTCGACATCGCCCGCACGCCCACCGGCATCGACGAGCTCGACCGCGTG
CTCGGCGGCGGCATGGTGCCCGGCGGCGTGGTGCTGATCGGCGGTGACCCGGGCATCGGCAAGTCGACCTTGCTGCTGCA
GGCGCTGGACGCCTTGTCGCAGCACATGAAGGCGCTGTACGTCACCGGCGAGGAGTCCGGCGCGCAGGTGGCCCTGCGGG
CACGGCGGCTCGGGCTGGACGGCTCTCGGGTGCGGGTGCAGGCCGAGATCCAGCTGGAGAAGATCCTGGCCACCGTCGAG
GCCGAGAAGCCCGCCGTGGCGGTGATCGACTCCATCCAGACGGTCTACTCCGAGCAGCTCACCTCCGCGCCCGGTTCGGT
GGCCCAGGTGCGCGAATGCTCGGCCCAGCTGACCCGCACCGCCAAGGCCACCGGCACCTCGATGGTGCTGGTGGGCCATG
TCACCAAGGAAGGCGCACTGGCGGGCCCGCGCGTACTGGAGCACATCGTCGACACGGTGCTCTATTTCGAAGGAGACACG
CACAGCGCCTTCCGGCTGGTGCGGGCCTTCAAGAACCGCTTCGGCGCGGTCAACGAGATCGGCGTGTTCGCCATGACCGA
GCGCGGCCTGAAGGGCGTGGCCAATCCCAGCGCCATCTTCCTGTCGACCCACGGCGAGCCGGTGCCCGGCTCCTGCGTGC
TGGTGACGCTGGAAGGCACACGGCCCATGCTGGTGGAGGTGCAGGCACTGGTCGACAGCTCGCCCATCCCCAGCCCGCGC
CGCCTGAGCGTGGGACTGGAGCAGAACCGCTTGGCCATGCTGCTGGCGGTGATGCACCGGCATGCCGGCATCGCCTGCTT
CGACCAGGACGTGTTCGTCAACGCGGTCGGCGGCGTGCGCATCAGCGAGCCGGCGGCCGACCTGGCGGTGATGCTGGCCA
TCCAGAGCTCGCTGCGCGGCCGGCCGCTGCCGCGCGGCTTCCTGACCTTCGGCGAAGTCGGCCTGGCCGGCGAGGTGCGG
CCCGCGCCGCGTGGCCAGGAGCGGCTGAAGGAAGCTGCCAAGCTGGGCTTCGGCATCGCCGTCGTGCCCAAGGCCAATGT
GCCGAAGAAGCCCATCGAAGGGCTGGAGATTCACGCGGTGGAGCGGGTCGAGCAGGCCATCGACCTGGTGCGGGAGCTGG
CCGCATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(62-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.026

100

0.481
  radA Streptococcus mitis NCTC 12261

45.861

98.242

0.451
  radA Streptococcus pneumoniae Rx1

47.307

93.846

0.444
  radA Streptococcus pneumoniae D39

47.307

93.846

0.444
  radA Streptococcus pneumoniae R6

47.307

93.846

0.444
  radA Streptococcus pneumoniae TIGR4

47.307

93.846

0.444
  radA Streptococcus mitis SK321

47.307

93.846

0.444