Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   N7L95_RS14550 Genome accession   NZ_CP106951
Coordinates   3290921..3292441 (+) Length   506 a.a.
NCBI ID   WP_301255966.1    Uniprot ID   -
Organism   Eleftheria terrae strain P9846-PB     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3285921..3297441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7L95_RS14525 (N7L95_14545) argS 3286200..3287885 (+) 1686 WP_301255961.1 arginine--tRNA ligase -
  N7L95_RS14530 (N7L95_14550) - 3287926..3288597 (+) 672 WP_301255962.1 SPOR domain-containing protein -
  N7L95_RS14535 (N7L95_14555) - 3288684..3289352 (+) 669 WP_301255963.1 thiol:disulfide interchange protein DsbA/DsbL -
  N7L95_RS14540 (N7L95_14560) lptA 3289507..3290151 (+) 645 WP_301255964.1 lipopolysaccharide transport periplasmic protein LptA -
  N7L95_RS14545 (N7L95_14565) lptB 3290148..3290921 (+) 774 WP_301255965.1 LPS export ABC transporter ATP-binding protein -
  N7L95_RS14550 (N7L95_14570) rpoN/rpoN1 3290921..3292441 (+) 1521 WP_301255966.1 RNA polymerase factor sigma-54 Machinery gene
  N7L95_RS14555 (N7L95_14575) - 3292438..3293679 (+) 1242 WP_301255967.1 THUMP domain-containing protein -
  N7L95_RS14560 (N7L95_14580) - 3293699..3294448 (-) 750 WP_301255968.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  N7L95_RS14565 (N7L95_14585) - 3294529..3296199 (-) 1671 WP_301255969.1 long-chain-fatty-acid--CoA ligase -
  N7L95_RS14570 (N7L95_14590) - 3296666..3297127 (+) 462 WP_301255970.1 hypothetical protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 56153.43 Da        Isoelectric Point: 4.6478

>NTDB_id=736794 N7L95_RS14550 WP_301255966.1 3290921..3292441(+) (rpoN/rpoN1) [Eleftheria terrae strain P9846-PB]
MKPSLQVRLSQHLALTPQLQQSIRLLQLSTLELHQEVEQMLEQNPFLEPDDDYAGESAQASSLPERPVTREQSQTADAEH
NEGGDAPDAAASVDSVEFGATERDDWENGTERDDFDGIRETPSNRNGAADEDDVDPIDRASPGISLQDHLRQQLLGMRLD
PTDAAAVMVLIESLDEDGYLADSLDAIVAELVPEDDPEAREELLDRLQCALRWLQHMEPTGVGARNLCECLSLQLRALPR
SEAQIIALMICKGSLDALARRDIKKLMAATGADEELIKQAQSLIVALEPKPGRPFVRAEANIVVPDVIVQKSGRNWKVVL
NPDVMPKLRINDLYAQAIKQHRSGDSQGLSARLQEARWFMKNIQQRFETIQRVSQAIVERQKNFFTHGEIAMKPLVLREI
ADELGLHESTISRVTTAKYMATPFGTFELKYFFGSSLNTDAGGNASSTAVRALIKQLVAAEDARKPLSDSQLSQMLEEQG
IQVARRTVAKYREALKIAPANLRKSL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=736794 N7L95_RS14550 WP_301255966.1 3290921..3292441(+) (rpoN/rpoN1) [Eleftheria terrae strain P9846-PB]
ATGAAACCGTCGCTGCAAGTTCGCCTCTCCCAGCACCTGGCGCTGACCCCCCAGCTGCAGCAGTCCATCCGGCTGCTTCA
GCTGTCGACGCTCGAGCTCCACCAGGAGGTCGAGCAGATGCTGGAGCAGAACCCCTTCCTGGAGCCCGACGACGACTACG
CCGGCGAATCCGCCCAGGCCAGCAGCCTGCCCGAGCGTCCGGTGACGCGTGAGCAGAGCCAGACCGCCGACGCCGAGCAC
AACGAGGGTGGCGACGCCCCCGACGCCGCGGCCAGCGTCGACTCGGTGGAGTTCGGCGCCACCGAACGCGACGACTGGGA
GAACGGCACCGAGCGGGACGACTTCGACGGCATCCGCGAGACGCCCAGCAACCGCAACGGCGCTGCCGACGAGGACGACG
TCGACCCGATCGACCGCGCCTCGCCCGGCATCAGCCTGCAGGACCACCTGCGCCAGCAGCTGCTGGGCATGCGGCTGGAC
CCGACCGATGCGGCGGCGGTGATGGTGCTGATCGAGTCGCTCGACGAGGACGGCTACCTGGCCGACTCGCTGGACGCCAT
CGTCGCCGAGCTGGTGCCCGAGGACGACCCCGAGGCCCGCGAGGAACTGCTCGACCGCCTGCAATGCGCGCTGCGCTGGC
TGCAGCACATGGAGCCGACCGGCGTCGGCGCGCGCAACCTGTGCGAATGCCTGAGCCTGCAGCTGCGGGCGCTGCCACGC
AGCGAGGCGCAGATCATCGCGCTGATGATCTGCAAGGGCAGCCTGGACGCGCTGGCCCGCCGCGACATCAAGAAGCTGAT
GGCCGCCACCGGCGCCGACGAGGAGCTGATCAAGCAGGCCCAGTCGCTGATCGTGGCGCTGGAGCCCAAGCCGGGCCGCC
CCTTCGTGCGGGCCGAGGCCAACATCGTCGTGCCCGACGTGATCGTGCAGAAGTCCGGCCGCAACTGGAAGGTGGTGCTC
AACCCGGACGTGATGCCCAAGCTGCGCATCAACGACCTCTACGCGCAGGCCATCAAGCAGCACCGCTCCGGCGACAGCCA
GGGCCTGAGTGCCCGGCTGCAAGAGGCACGCTGGTTCATGAAGAACATCCAGCAGCGCTTCGAGACCATCCAGCGCGTCT
CGCAGGCCATCGTCGAGCGGCAGAAGAACTTCTTCACCCATGGCGAGATCGCGATGAAGCCGCTGGTGCTGCGCGAGATT
GCCGACGAGCTGGGCCTGCACGAGTCCACCATCTCGCGCGTGACCACCGCCAAGTACATGGCCACGCCCTTCGGCACCTT
CGAGCTGAAGTACTTCTTCGGTTCCTCGCTCAACACCGACGCCGGCGGCAATGCCTCCAGCACCGCGGTGCGGGCGCTGA
TCAAGCAACTGGTGGCCGCCGAGGACGCGCGCAAGCCGCTGTCGGACAGCCAGCTCAGCCAGATGCTGGAGGAGCAGGGC
ATCCAGGTGGCCCGCCGCACCGTCGCCAAATACCGTGAGGCGCTCAAGATCGCCCCGGCCAACCTGCGCAAGAGCCTGTG
A

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(349-504)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(143-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

54.826

100

0.561