Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   OAT02_RS23730 Genome accession   NZ_CP106947
Coordinates   4564617..4564940 (+) Length   107 a.a.
NCBI ID   WP_053513383.1    Uniprot ID   A0A9X6Q1W0
Organism   Bacillus thuringiensis strain 4F5     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4559617..4569940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OAT02_RS23715 (OAT02_23715) - 4560131..4561498 (-) 1368 WP_000028382.1 aldehyde dehydrogenase -
  OAT02_RS23720 (OAT02_23720) inhA1 4561670..4564060 (-) 2391 WP_001035946.1 M6 family metalloprotease immune inhibitor InhA1 -
  OAT02_RS23725 (OAT02_23725) - 4564403..4564537 (+) 135 WP_000276219.1 anti-repressor SinI family protein -
  OAT02_RS23730 (OAT02_23730) sinR 4564617..4564940 (+) 324 WP_053513383.1 helix-turn-helix domain-containing protein Regulator
  OAT02_RS23735 (OAT02_23735) calY 4565007..4565600 (-) 594 WP_053513385.1 biofilm matrix protein CalY -
  OAT02_RS23740 (OAT02_23740) - 4565954..4566742 (-) 789 WP_053513390.1 DUF4047 domain-containing protein -
  OAT02_RS23745 (OAT02_23745) - 4566877..4567464 (-) 588 WP_000172854.1 CalY family protein -
  OAT02_RS23750 (OAT02_23750) - 4567525..4568094 (-) 570 WP_000767792.1 signal peptidase I -
  OAT02_RS23755 (OAT02_23755) - 4568292..4569578 (-) 1287 WP_053513392.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12308.14 Da        Isoelectric Point: 9.6244

>NTDB_id=736771 OAT02_RS23730 WP_053513383.1 4564617..4564940(+) (sinR) [Bacillus thuringiensis strain 4F5]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETSLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNNK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=736771 OAT02_RS23730 WP_053513383.1 4564617..4564940(+) (sinR) [Bacillus thuringiensis strain 4F5]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAATTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAGCCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATAATAA
ATAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682