Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   OAT02_RS17685 Genome accession   NZ_CP106947
Coordinates   3407690..3407968 (-) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus thuringiensis strain 4F5     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 3406254..3411948 3407690..3407968 within 0


Gene organization within MGE regions


Location: 3406254..3411948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OAT02_RS17680 (OAT02_17680) - 3406254..3407599 (+) 1346 WP_087986227.1 IS3-like element ISBth10 family transposase -
  OAT02_RS17685 (OAT02_17685) abrB 3407690..3407968 (-) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  OAT02_RS17690 (OAT02_17690) - 3408109..3408986 (-) 878 Protein_3435 helix-turn-helix domain-containing protein -
  OAT02_RS17695 (OAT02_17695) - 3409363..3409614 (+) 252 WP_000827560.1 LuxR C-terminal-related transcriptional regulator -
  OAT02_RS17700 (OAT02_17700) - 3409855..3410205 (-) 351 Protein_3437 hypothetical protein -
  OAT02_RS17705 (OAT02_17705) istA 3410295..3411590 (+) 1296 WP_000275580.1 IS21-like element IS232 family transposase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=736766 OAT02_RS17685 WP_000842216.1 3407690..3407968(-) (abrB) [Bacillus thuringiensis strain 4F5]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=736766 OAT02_RS17685 WP_000842216.1 3407690..3407968(-) (abrB) [Bacillus thuringiensis strain 4F5]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGTATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGATCAGATTATTTTACGAAAATATCAATCTCCCAGAGCTT
GTGCACTTACAGGAGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489