Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OAT02_RS01890 Genome accession   NZ_CP106947
Coordinates   337642..338163 (+) Length   173 a.a.
NCBI ID   WP_053513689.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain 4F5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 332642..343163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OAT02_RS01860 (OAT02_01860) spo0J 333090..333941 (+) 852 WP_001051832.1 stage 0 sporulation protein Spo0J -
  OAT02_RS01865 (OAT02_01865) yyaC 333962..334558 (-) 597 WP_053513691.1 spore protease YyaC -
  OAT02_RS01870 (OAT02_01870) - 334818..335699 (+) 882 WP_053513690.1 mechanosensitive ion channel family protein -
  OAT02_RS01875 (OAT02_01875) - 335720..335917 (+) 198 WP_000435485.1 DUF951 domain-containing protein -
  OAT02_RS01880 (OAT02_01880) ychF 336033..337133 (+) 1101 WP_000524672.1 redox-regulated ATPase YchF -
  OAT02_RS01885 (OAT02_01885) rpsF 337325..337615 (+) 291 WP_001233778.1 30S ribosomal protein S6 -
  OAT02_RS01890 (OAT02_01890) ssbA 337642..338163 (+) 522 WP_053513689.1 single-stranded DNA-binding protein Machinery gene
  OAT02_RS01895 (OAT02_01895) rpsR 338209..338442 (+) 234 WP_000918873.1 30S ribosomal protein S18 -
  OAT02_RS01900 (OAT02_01900) - 338523..339458 (+) 936 WP_000806422.1 YybS family protein -
  OAT02_RS01905 (OAT02_01905) - 339537..341510 (+) 1974 WP_053513687.1 DHH family phosphoesterase -
  OAT02_RS01910 (OAT02_01910) rplI 341507..341953 (+) 447 WP_000864228.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18793.58 Da        Isoelectric Point: 4.9327

>NTDB_id=736740 OAT02_RS01890 WP_053513689.1 337642..338163(+) (ssbA) [Bacillus thuringiensis strain 4F5]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=736740 OAT02_RS01890 WP_053513689.1 337642..338163(+) (ssbA) [Bacillus thuringiensis strain 4F5]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTGCAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAACCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.316

100

0.74
  ssb Latilactobacillus sakei subsp. sakei 23K

58.286

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

61.272

0.399
  ssb Glaesserella parasuis strain SC1401

36.813

100

0.387