Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OAT02_RS01795 Genome accession   NZ_CP106947
Coordinates   320185..321312 (-) Length   375 a.a.
NCBI ID   WP_053513698.1    Uniprot ID   A0A9X6Q233
Organism   Bacillus thuringiensis strain 4F5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 315185..326312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OAT02_RS01785 (OAT02_01785) gyrA 315664..318135 (-) 2472 WP_001282864.1 DNA gyrase subunit A -
  OAT02_RS01790 (OAT02_01790) gyrB 318224..320146 (-) 1923 WP_000435982.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  OAT02_RS01795 (OAT02_01795) recF 320185..321312 (-) 1128 WP_053513698.1 DNA replication/repair protein RecF Machinery gene
  OAT02_RS01800 (OAT02_01800) yaaA 321325..321537 (-) 213 WP_000821364.1 S4 domain-containing protein YaaA -
  OAT02_RS01805 (OAT02_01805) dnaN 321665..322810 (-) 1146 WP_001212884.1 DNA polymerase III subunit beta -
  OAT02_RS01810 (OAT02_01810) dnaA 322990..324330 (-) 1341 WP_000428017.1 chromosomal replication initiator protein DnaA -
  OAT02_RS01815 (OAT02_01815) rpmH 324895..325029 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  OAT02_RS01820 (OAT02_01820) rnpA 325106..325453 (+) 348 WP_000726621.1 ribonuclease P protein component -
  OAT02_RS01825 (OAT02_01825) spoIIIJ 325506..326273 (+) 768 WP_000727737.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43334.61 Da        Isoelectric Point: 6.4279

>NTDB_id=736739 OAT02_RS01795 WP_053513698.1 320185..321312(-) (recF) [Bacillus thuringiensis strain 4F5]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHQGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRE

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=736739 OAT02_RS01795 WP_053513698.1 320185..321312(-) (recF) [Bacillus thuringiensis strain 4F5]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCACAAGGGAAAACAAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGCTGGGATGAAGATTTTGGTCAAATAAAGGGGAAATTACAAAAAAGAAACAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAGTTAAGTCAATA
TATTGGCGTGATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTATATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTAATTGA
GCATGGTGCGAAAATACTGCAAAAACGTTTTGAATTTTTGCATTTGCTACAGGAATGGGCAGCTCCAATTCATCAAGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGACGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTGATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTGTTGGATGATGTTTTATCA
GAATTAGATGATTATCGTCAATCACATCTTTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACTGTAGATTGTGAAATAGATA
GGGAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.133

0.653