Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   P8R49_RS09365 Genome accession   NZ_CP121266
Coordinates   1782952..1783383 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain 107105     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1777952..1788383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R49_RS09345 (P8R49_09345) spoVS 1778514..1778774 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  P8R49_RS09350 (P8R49_09350) tdh 1779039..1780082 (+) 1044 WP_014479818.1 L-threonine 3-dehydrogenase -
  P8R49_RS09355 (P8R49_09355) kbl 1780095..1781273 (+) 1179 WP_014479819.1 glycine C-acetyltransferase -
  P8R49_RS09360 (P8R49_09360) miaB 1781421..1782950 (+) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  P8R49_RS09365 (P8R49_09365) ymcA 1782952..1783383 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  P8R49_RS09370 (P8R49_09370) cotE 1783645..1784190 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  P8R49_RS09375 (P8R49_09375) hexA 1784323..1786899 (+) 2577 WP_014479821.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=736733 P8R49_RS09365 WP_003231834.1 1782952..1783383(+) (ymcA) [Bacillus subtilis strain 107105]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=736733 P8R49_RS09365 WP_003231834.1 1782952..1783383(+) (ymcA) [Bacillus subtilis strain 107105]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1