Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   P8R49_RS08380 Genome accession   NZ_CP121266
Coordinates   1581369..1582394 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain 107105     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1576369..1587394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R49_RS08345 (P8R49_08345) ylbE 1576669..1576908 (+) 240 WP_003232231.1 YlbE-like family protein -
  P8R49_RS08350 (P8R49_08350) ylbF 1577024..1577473 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  P8R49_RS08355 (P8R49_08355) ylbG 1577528..1577800 (+) 273 WP_009967171.1 YlbG family protein -
  P8R49_RS08360 (P8R49_08360) rsmD 1578123..1578677 (+) 555 WP_033881642.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  P8R49_RS08365 (P8R49_08365) coaD 1578682..1579167 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  P8R49_RS08370 (P8R49_08370) spoVV 1579178..1580404 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  P8R49_RS08375 (P8R49_08375) ylbK 1580585..1581367 (+) 783 WP_003232221.1 patatin family protein -
  P8R49_RS08380 (P8R49_08380) sepM 1581369..1582394 (+) 1026 WP_003245451.1 protease DdcP Regulator
  P8R49_RS08385 (P8R49_08385) tmcAL 1582411..1583658 (-) 1248 WP_014479717.1 nucleotidyltransferase -
  P8R49_RS08390 (P8R49_08390) - 1583655..1583840 (-) 186 WP_003232215.1 hypothetical protein -
  P8R49_RS08395 (P8R49_08395) ylbN 1583868..1584386 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  P8R49_RS08400 (P8R49_08400) rpmF 1584408..1584587 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  P8R49_RS08405 (P8R49_08405) gerR 1584733..1585314 (+) 582 WP_014479720.1 sporulation specific transcriptional regulator GerR -
  P8R49_RS08410 (P8R49_08410) ylbP 1585371..1585853 (-) 483 WP_014476736.1 N-acetyltransferase -
  P8R49_RS08415 (P8R49_08415) panEA 1586013..1586909 (+) 897 WP_014479721.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=736722 P8R49_RS08380 WP_003245451.1 1581369..1582394(+) (sepM) [Bacillus subtilis strain 107105]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=736722 P8R49_RS08380 WP_003245451.1 1581369..1582394(+) (sepM) [Bacillus subtilis strain 107105]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTAATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGTCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402