Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OEG87_RS14440 Genome accession   NZ_CP106924
Coordinates   2920781..2921410 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MFDS1016424     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2915781..2926410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEG87_RS14425 (OEG87_14425) helD 2916023..2918077 (-) 2055 WP_001297106.1 DNA helicase IV -
  OEG87_RS14430 (OEG87_14430) yccF 2918200..2918646 (+) 447 WP_001261235.1 YccF domain-containing protein -
  OEG87_RS14435 (OEG87_14435) yccS 2918656..2920818 (+) 2163 WP_000875015.1 YccS family putative transporter -
  OEG87_RS14440 (OEG87_14440) sxy/tfoX 2920781..2921410 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  OEG87_RS14445 (OEG87_14445) sulA 2921629..2922138 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  OEG87_RS14450 (OEG87_14450) ompA 2922495..2923547 (+) 1053 WP_000750419.1 porin OmpA -
  OEG87_RS14455 (OEG87_14455) matP 2923623..2924075 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  OEG87_RS14460 (OEG87_14460) ycbZ 2924261..2926021 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=736685 OEG87_RS14440 WP_000839153.1 2920781..2921410(-) (sxy/tfoX) [Escherichia coli strain MFDS1016424]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=736685 OEG87_RS14440 WP_000839153.1 2920781..2921410(-) (sxy/tfoX) [Escherichia coli strain MFDS1016424]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1