Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   K6K01_RS02955 Genome accession   NZ_AP024622
Coordinates   568035..568676 (+) Length   213 a.a.
NCBI ID   WP_003244318.1    Uniprot ID   P96686
Organism   Bacillus subtilis strain BEST3096     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 563035..573676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6K01_RS02925 (BsBEST3096_05260) ydfE 564230..564853 (-) 624 WP_003243530.1 flavin reductase family protein -
  K6K01_RS02930 (BsBEST3096_05270) ydfF 564943..565623 (+) 681 WP_003244115.1 helix-turn-helix transcriptional regulator -
  K6K01_RS02935 (BsBEST3096_05280) ydfG 565703..566146 (-) 444 WP_003242768.1 carboxymuconolactone decarboxylase family protein -
  K6K01_RS02940 (BsBEST3096_05290) - 566232..566411 (-) 180 WP_010886421.1 hypothetical protein -
  K6K01_RS02945 - 566408..566551 (-) 144 WP_003243880.1 hypothetical protein -
  K6K01_RS02950 (BsBEST3096_05300) ydfH 566819..568042 (+) 1224 WP_010886422.1 two-component system sensor histidine kinase YdfH -
  K6K01_RS02955 (BsBEST3096_05310) vraR 568035..568676 (+) 642 WP_003244318.1 two-component system response regulator YdfI Regulator
  K6K01_RS02960 (BsBEST3096_05320) pleJ 568792..570966 (+) 2175 WP_003243548.1 MMPL family transporter -
  K6K01_RS02965 (BsBEST3096_05330) cesA 571378..572280 (-) 903 WP_003242638.1 carboxylesterase -
  K6K01_RS02970 (BsBEST3096_05340) ydfK 572482..573171 (-) 690 WP_003242513.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23973.92 Da        Isoelectric Point: 5.4183

>NTDB_id=73660 K6K01_RS02955 WP_003244318.1 568035..568676(+) (vraR) [Bacillus subtilis strain BEST3096]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=73660 K6K01_RS02955 WP_003244318.1 568035..568676(+) (vraR) [Bacillus subtilis strain BEST3096]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTAGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAAGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCCATCAGAGGAAATGTGCTATTGCAGCCTGATATCCTTAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P96686

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.493

99.061

0.362

Multiple sequence alignment