Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   N8Z00_RS08245 Genome accession   NZ_CP106885
Coordinates   1839545..1840594 (+) Length   349 a.a.
NCBI ID   WP_268081160.1    Uniprot ID   -
Organism   Achromobacter spanius strain LIG3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1834545..1845594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8Z00_RS08215 (N8Z00_08215) - 1835850..1836236 (+) 387 WP_100854473.1 MOSC N-terminal beta barrel domain-containing protein -
  N8Z00_RS08220 (N8Z00_08220) - 1836304..1837518 (-) 1215 WP_268081158.1 benzoate/H(+) symporter BenE family transporter -
  N8Z00_RS08225 (N8Z00_08225) - 1837515..1837766 (-) 252 WP_006221659.1 YfhL family 4Fe-4S dicluster ferredoxin -
  N8Z00_RS08230 (N8Z00_08230) coaD 1837872..1838375 (-) 504 WP_046807920.1 pantetheine-phosphate adenylyltransferase -
  N8Z00_RS08235 (N8Z00_08235) rsmD 1838434..1839000 (-) 567 WP_050448038.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  N8Z00_RS08240 (N8Z00_08240) - 1839049..1839249 (-) 201 WP_268081159.1 hypothetical protein -
  N8Z00_RS08245 (N8Z00_08245) pilA 1839545..1840594 (+) 1050 WP_268081160.1 signal recognition particle-docking protein FtsY Machinery gene
  N8Z00_RS08250 (N8Z00_08250) - 1840665..1842863 (-) 2199 WP_268081161.1 phosphocholine-specific phospholipase C -
  N8Z00_RS08255 (N8Z00_08255) - 1842936..1843127 (-) 192 WP_268081162.1 hypothetical protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 36216.70 Da        Isoelectric Point: 8.5380

>NTDB_id=736440 N8Z00_RS08245 WP_268081160.1 1839545..1840594(+) (pilA) [Achromobacter spanius strain LIG3]
MPAPTVSVAPTAAPAPIVTPVTAPSPAPVPTPAPTPAPDPVAEAPKKSSWLSRLKQGLSRTGQSIGGIFVGVKVDENLFE
ELESALIMADAGLEATEKLLTALRARVKKERIEDPAKVKTALRQLLADHLRPLERGFNLTSAKPLVVMIAGVNGAGKTTS
IGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVSVISQDGGDPAAVAFDAVNAGRARGMGVVMVDTAGRLPTQ
LHLMEELKKIRRVIGKADASAPHEVLLVVDGNTGQNALAQIRAFDAAINLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPI
PVYWIGVGESLEDLQPFVADEFAGALLAD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=736440 N8Z00_RS08245 WP_268081160.1 1839545..1840594(+) (pilA) [Achromobacter spanius strain LIG3]
ATGCCTGCGCCTACGGTTTCGGTTGCGCCGACTGCCGCGCCTGCTCCGATCGTAACGCCGGTGACTGCGCCATCCCCCGC
GCCGGTACCCACGCCAGCACCCACTCCAGCACCTGATCCCGTCGCCGAGGCGCCCAAGAAGTCGTCATGGCTGTCGCGCT
TGAAGCAGGGCTTGTCGCGCACCGGGCAGAGCATTGGCGGCATTTTCGTGGGCGTCAAGGTCGACGAAAACCTGTTCGAG
GAACTCGAATCGGCGCTCATTATGGCCGATGCGGGCCTGGAGGCCACCGAGAAGCTGCTGACCGCGCTGCGTGCGCGGGT
CAAGAAAGAACGCATTGAAGACCCCGCCAAGGTGAAGACGGCGCTGCGCCAGTTGCTGGCCGACCACCTGCGTCCGCTGG
AGCGCGGCTTCAACCTGACCAGCGCGAAGCCGCTGGTGGTGATGATTGCCGGCGTCAACGGCGCGGGCAAGACCACGTCC
ATCGGCAAGCTGGCGCACACGTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGCGGCGGGCGACACCTTCCGTGCCGCGGC
CCGTGAACAGCTGGTGGAATGGGGCAGCCGCAACAACGTCAGCGTGATTTCGCAGGATGGCGGCGACCCCGCCGCCGTGG
CGTTCGATGCCGTCAACGCCGGTCGCGCGCGGGGAATGGGCGTGGTCATGGTGGACACCGCCGGCCGCTTGCCCACGCAG
TTGCACCTGATGGAAGAGCTGAAAAAGATCCGCCGCGTCATCGGCAAGGCGGATGCATCGGCGCCGCACGAAGTGCTGTT
GGTGGTGGACGGCAACACCGGCCAGAACGCGCTGGCGCAGATTCGCGCCTTTGATGCGGCCATCAACCTGACGGGCCTGG
TCGTGACCAAGCTGGACGGCACCGCCAAGGGCGGCACGCTGGCCGCCGTGGCCGCGGGTAGCCAGGGCGTGCGGCCGATT
CCGGTGTATTGGATCGGCGTGGGCGAAAGCCTGGAAGACCTGCAGCCCTTCGTGGCTGATGAGTTCGCGGGCGCGCTGCT
GGCGGACTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(145-347)

SRP54-type protein, helical bundle domain (SRP54_N)

(63-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

58.17

87.679

0.51