Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   M9799_RS11520 Genome accession   NZ_CP106881
Coordinates   2547486..2548730 (-) Length   414 a.a.
NCBI ID   WP_231041818.1    Uniprot ID   -
Organism   Comamonas endophytica strain 5MLIR     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2542486..2553730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9799_RS11490 (M9799_11490) - 2542612..2543373 (+) 762 WP_231041812.1 SURF1 family protein -
  M9799_RS11495 (M9799_11495) - 2543321..2544055 (+) 735 WP_231041813.1 hypothetical protein -
  M9799_RS11500 (M9799_11500) - 2544291..2544905 (+) 615 WP_231041814.1 SCO family protein -
  M9799_RS11505 (M9799_11505) - 2544943..2545941 (-) 999 WP_231041815.1 tripartite tricarboxylate transporter substrate binding protein -
  M9799_RS11510 (M9799_11510) rpoH 2546040..2546984 (-) 945 WP_231041816.1 RNA polymerase sigma factor RpoH -
  M9799_RS11515 (M9799_11515) cutA 2547163..2547489 (+) 327 WP_231041817.1 divalent-cation tolerance protein CutA -
  M9799_RS11520 (M9799_11520) pilA 2547486..2548730 (-) 1245 WP_231041818.1 signal recognition particle-docking protein FtsY Machinery gene
  M9799_RS11525 (M9799_11525) - 2548759..2550198 (+) 1440 WP_231041819.1 pitrilysin family protein -
  M9799_RS11530 (M9799_11530) - 2550219..2551589 (+) 1371 WP_231041820.1 pitrilysin family protein -
  M9799_RS11535 (M9799_11535) rsmD 2551586..2552323 (+) 738 WP_231041821.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  M9799_RS11540 (M9799_11540) coaD 2552415..2552915 (+) 501 WP_231041822.1 pantetheine-phosphate adenylyltransferase -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 43077.67 Da        Isoelectric Point: 7.0815

>NTDB_id=736414 M9799_RS11520 WP_231041818.1 2547486..2548730(-) (pilA) [Comamonas endophytica strain 5MLIR]
MFSFFKKKPLPSAVPPADEPASTPASAPTQHAPVPEIDPQIIPESAARGSDAAPASGPPAAPGAMDRLRQMFGAGKPAPA
PAVPASAALPPPAPPAAPVPVPAPMPVPAPAVPPAERAHWLGRLKAGLRKTGSSISTVFTGTKIDEALYEELEDALLMAD
TGVKATQHLLTDLKRRVKETKATDPAAVKELLAQSLADLLQPLEKPLVIGQFTPTVIMVAGVNGAGKTTSIGKLTKHLAD
EGASVLLAAADTYRAAAREQLGVWATRNTVEIVSQQGGDPAAVSFDAVTAGKARKKDVVLVDTAGRLPTQLHLMEELKKI
RRVVTKADATAPHEVLLVIDGNTGQNALAQVRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKLEDL
ETFNAREFAQALLS

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=736414 M9799_RS11520 WP_231041818.1 2547486..2548730(-) (pilA) [Comamonas endophytica strain 5MLIR]
ATGTTCAGTTTTTTCAAAAAAAAGCCCCTTCCTTCCGCCGTGCCGCCTGCCGATGAGCCGGCGAGCACGCCCGCGTCCGC
GCCTACCCAGCACGCACCCGTGCCGGAAATTGATCCGCAGATTATCCCGGAGTCTGCCGCCCGCGGGTCGGACGCGGCGC
CAGCGTCAGGTCCGCCGGCCGCGCCGGGCGCCATGGACCGCCTGCGCCAGATGTTCGGCGCGGGCAAGCCGGCGCCGGCG
CCGGCCGTTCCCGCCAGCGCAGCGCTCCCCCCTCCTGCCCCGCCCGCCGCACCCGTGCCTGTGCCTGCACCCATGCCAGT
CCCCGCACCCGCGGTGCCCCCGGCGGAGCGCGCCCACTGGCTGGGCCGGCTCAAGGCCGGTCTGCGCAAGACCGGCTCCA
GCATCTCCACGGTGTTCACCGGCACCAAGATCGACGAAGCGCTGTATGAAGAGCTCGAAGATGCGCTGCTGATGGCCGAC
ACCGGCGTCAAGGCCACGCAGCATCTGCTCACCGACCTCAAGCGCCGCGTCAAGGAGACCAAGGCCACCGACCCGGCGGC
CGTGAAGGAACTGCTGGCCCAGTCGCTTGCCGACCTGCTGCAGCCGCTGGAAAAGCCGCTGGTGATCGGCCAGTTCACGC
CCACCGTCATCATGGTCGCGGGCGTCAACGGCGCAGGCAAGACCACCTCCATCGGCAAGCTCACCAAGCATCTGGCCGAC
GAAGGCGCCAGCGTGCTGCTGGCCGCGGCCGACACCTACCGCGCGGCCGCGCGCGAGCAGCTCGGCGTCTGGGCCACGCG
CAATACCGTGGAGATCGTCAGCCAGCAGGGCGGCGACCCCGCGGCCGTGAGCTTCGATGCCGTGACGGCGGGCAAGGCGC
GCAAGAAGGATGTGGTGCTGGTCGATACCGCGGGCCGCCTGCCCACCCAGCTGCACCTGATGGAGGAGCTCAAGAAGATC
CGCCGCGTGGTCACCAAGGCCGATGCCACGGCGCCGCACGAGGTGCTGCTGGTGATCGACGGCAACACCGGCCAGAACGC
GCTGGCGCAGGTGCGCGCGTTCGACGACGCGCTGCAACTGACCGGCCTGATCGTGACCAAGCTCGACGGCACCGCCAAGG
GCGGCGTGCTGGCCGCGATCGCGCAGGAGCGCCCCGTTCCGGTGTACTTCATTGGCGTGGGCGAGAAGCTCGAGGACCTC
GAGACCTTCAACGCCCGCGAGTTCGCGCAGGCGCTGCTCAGCTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(214-413)

SRP54-type protein, helical bundle domain (SRP54_N)

(133-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.694

100

0.495