Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | DO80_RS07310 | Genome accession | NZ_AP019730 |
| Coordinates | 1460843..1461418 (-) | Length | 191 a.a. |
| NCBI ID | WP_108304263.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain TN2wt | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1455843..1466418
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DO80_RS08095 (DO80_14080) | - | 1457552..1458118 (-) | 567 | WP_232051505.1 | restriction endonuclease subunit S | - |
| DO80_RS08100 (DO80_14090) | - | 1458136..1458777 (-) | 642 | WP_172620377.1 | restriction endonuclease subunit S | - |
| DO80_RS07305 (DO80_14100) | - | 1458774..1460810 (-) | 2037 | WP_108304262.1 | N-6 DNA methylase | - |
| DO80_RS07310 (DO80_14110) | comFC | 1460843..1461418 (-) | 576 | WP_108304263.1 | ComF family protein | Machinery gene |
| DO80_RS07315 (DO80_14120) | tmk | 1461406..1461981 (-) | 576 | WP_108304264.1 | dTMP kinase | - |
| DO80_RS07320 (DO80_14130) | coaD | 1461983..1462456 (-) | 474 | WP_014727242.1 | pantetheine-phosphate adenylyltransferase | - |
| DO80_RS07325 (DO80_14140) | - | 1462456..1463019 (-) | 564 | WP_096468623.1 | UbiX family flavin prenyltransferase | - |
| DO80_RS07330 (DO80_14150) | flgA | 1463029..1463685 (-) | 657 | WP_108304265.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| DO80_RS07335 (DO80_14160) | uvrD | 1463682..1465727 (-) | 2046 | WP_172620378.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21282.88 Da Isoelectric Point: 9.2796
>NTDB_id=73640 DO80_RS07310 WP_108304263.1 1460843..1461418(-) (comFC) [Helicobacter pylori strain TN2wt]
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRDFIFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNTKAHFAIALCSADE
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRDFIFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNTKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=73640 DO80_RS07310 WP_108304263.1 1460843..1461418(-) (comFC) [Helicobacter pylori strain TN2wt]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTTAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTACTAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCATCTTCAAAGGCGATAAAAATTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACACAAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTTAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTACTAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCATCTTCAAAGGCGATAAAAATTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACACAAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.241 |
100 |
0.942 |