Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   P7F77_RS03900 Genome accession   NZ_CP121204
Coordinates   817309..818280 (+) Length   323 a.a.
NCBI ID   WP_000876313.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA0907     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 812309..823280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7F77_RS03885 (P7F77_03885) nrdI 813379..813777 (+) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  P7F77_RS03890 (P7F77_03890) nrdE 813740..815845 (+) 2106 WP_000855516.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  P7F77_RS03895 (P7F77_03895) nrdF 815963..816934 (+) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  P7F77_RS03900 (P7F77_03900) ceuB 817309..818280 (+) 972 WP_000876313.1 ABC transporter permease Machinery gene
  P7F77_RS03905 (P7F77_03905) - 818267..819223 (+) 957 WP_001245581.1 iron chelate uptake ABC transporter family permease subunit -
  P7F77_RS03910 (P7F77_03910) - 819220..819981 (+) 762 WP_000616861.1 ATP-binding cassette domain-containing protein -
  P7F77_RS03915 (P7F77_03915) - 820096..821124 (+) 1029 WP_000754454.1 siderophore ABC transporter substrate-binding protein -
  P7F77_RS03920 (P7F77_03920) - 821441..821755 (-) 315 WP_001127270.1 CHY zinc finger protein -
  P7F77_RS03925 (P7F77_03925) murB 821773..822696 (-) 924 WP_000608439.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35544.01 Da        Isoelectric Point: 10.1963

>NTDB_id=736393 P7F77_RS03900 WP_000876313.1 817309..818280(+) (ceuB) [Staphylococcus aureus strain SA0907]
MKYLLKGKILLLLLILLTIISLFIGVSELSIKDIFHLSDSQQNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSISGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINVALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRVIVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=736393 P7F77_RS03900 WP_000876313.1 817309..818280(+) (ceuB) [Staphylococcus aureus strain SA0907]
ATGAAGTATTTATTAAAGGGAAAAATTTTGCTTCTATTACTTATATTGCTAACAATCATTTCGTTGTTTATAGGTGTCAG
TGAACTGTCTATTAAAGATATCTTTCATTTATCAGACTCACAGCAAAATATATTGTTCTCAAGTCGAATACCAAGAACAA
TGAGTATTTTAATTGCTGGAAGTTCATTAGCTTTAGCTGGCCTAATCATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCAACTACAGCTGGGACGATGGAGTGGGCAAAATTAGGTATCTTAATTGCCTTATTATTCTTTCCAACTGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGCATCAGCGGAACATTTTTATTTGTTAAAATTATTGATTTTATCAAAGTGA
AAGATGTCATCTTTGTACCACTATTAGGGATTATGATGGGTGGCATTGTCGCTAGTTTTACAACGTTTATTTCATTACGT
ACGAACGCCGTACAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGTTATGAAATTTTATA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCGAATCATTTCACAATTGTAGGAATGGGTAAAGACTTTACCA
ATAATTTAGGTTTGAGTTATGAAAAATTAATAAATGTTGCTCTATTTATTACTGCCACAATTACGGCATTAGTCGTCGTG
ACAGTTGGAACTTTACCATTCTTAGGTTTAGTTATTCCAAATATTATTTCGATTTATAGAGGCGATCATTTGAAAAATGC
AATTCCTCATACAATGATGTTAGGTGCAATATTTGTACTGTTTTCAGATATTGTAGGTAGAGTCATCGTTTATCCTTATG
AAATAAACATTGGCTTAACGATTGGTGTGTTTGGAACAATCATTTTCCTTATCTTACTAATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.5

99.071

0.471