Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OE104_RS13010 Genome accession   NZ_CP106878
Coordinates   2693545..2694924 (-) Length   459 a.a.
NCBI ID   WP_275417238.1    Uniprot ID   A0A9E8LTY1
Organism   Fervidibacillus albus strain MEBiC13591     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2688545..2699924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OE104_RS12990 (OE104_13000) gltX 2689512..2690966 (-) 1455 WP_275417234.1 glutamate--tRNA ligase -
  OE104_RS12995 (OE104_13005) ispF 2691052..2691537 (-) 486 WP_275417235.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  OE104_RS13000 (OE104_13010) ispD 2691578..2692264 (-) 687 WP_275417236.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  OE104_RS13005 (OE104_13015) - 2692342..2693427 (-) 1086 WP_275417237.1 PIN/TRAM domain-containing protein -
  OE104_RS13010 (OE104_13020) radA 2693545..2694924 (-) 1380 WP_275417238.1 DNA repair protein RadA Machinery gene
  OE104_RS13015 (OE104_13025) clpC 2695037..2697466 (-) 2430 WP_275417239.1 ATP-dependent protease ATP-binding subunit ClpC -
  OE104_RS13020 (OE104_13030) - 2697486..2698556 (-) 1071 WP_275417240.1 protein arginine kinase -
  OE104_RS13025 (OE104_13035) - 2698556..2699095 (-) 540 WP_275417241.1 UvrB/UvrC motif-containing protein -
  OE104_RS13030 (OE104_13040) - 2699133..2699594 (-) 462 WP_275417242.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50734.28 Da        Isoelectric Point: 7.4025

>NTDB_id=736378 OE104_RS13010 WP_275417238.1 2693545..2694924(-) (radA) [Fervidibacillus albus strain MEBiC13591]
MVKVKSKFICQSCGYESPKWMGRCPNCNEWNTLTEEIAEIKGNRRAFYNGANLNEKEKRKPVPLSKVESIEETRLSTDSK
ELNRVLGGGIVRGSLVLIGGDPGIGKSTLLLQVSHQLANKDLTVLYISGEESIKQTKLRADRLGTTSDRLYVLAETNLLI
IEEAIREIKPDFTVVDSIQTIFHPDITSAPGSVSQVRESTSELMRIAKTNGIPIFIVGHVTKEGNIAGPRLLEHMVDTVL
YFEGERHHAYRILRAVKNRFGSTNELGIFEMKETGLEEVHNPSQIFLEERMKGASGSTVVASMEGTRPILVEIQALISPT
TFGNPRRMATGIDHNRVSLLMAVLEKRVGFLLQNQDAYLKAAGGVKLDEPAIDLAIAISIASSFRDQPTKATDCFIGEVG
LTGEIRRVSRIEQRVKEAEKLGFQRVFLPYNNLGSWCDSSPIQLVGVSTIDEALKVALN

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=736378 OE104_RS13010 WP_275417238.1 2693545..2694924(-) (radA) [Fervidibacillus albus strain MEBiC13591]
ATGGTGAAAGTAAAATCAAAATTTATTTGCCAATCGTGCGGCTATGAATCACCGAAATGGATGGGGCGCTGCCCAAATTG
TAATGAATGGAACACATTGACCGAAGAAATTGCTGAAATCAAGGGGAATCGACGAGCATTTTACAATGGGGCAAATTTGA
ACGAGAAAGAAAAAAGGAAACCCGTCCCGTTGTCGAAAGTCGAATCCATCGAAGAAACCCGTTTGTCGACCGATTCAAAG
GAATTAAATCGCGTGTTAGGGGGAGGAATTGTGAGAGGGTCTCTCGTTTTAATTGGAGGAGATCCAGGAATCGGTAAGTC
GACATTATTGCTCCAAGTTTCCCACCAATTAGCCAATAAGGATTTAACCGTCTTGTACATCTCCGGCGAAGAATCAATTA
AACAAACAAAATTAAGGGCCGATCGTCTCGGAACGACATCCGACCGTCTATATGTTCTCGCTGAAACGAATCTTTTAATA
ATCGAAGAAGCTATACGGGAAATCAAACCGGATTTTACCGTCGTTGATTCCATCCAAACGATTTTCCATCCTGATATTAC
CTCTGCACCAGGCTCTGTATCCCAAGTTCGTGAAAGTACAAGTGAATTAATGCGAATTGCGAAAACGAACGGCATTCCGA
TCTTTATCGTTGGCCATGTGACAAAGGAAGGAAATATTGCAGGACCGCGATTATTGGAACATATGGTTGACACCGTTTTA
TATTTTGAAGGGGAAAGGCATCACGCGTATCGCATTTTACGTGCTGTGAAAAATCGATTTGGTTCAACAAATGAGCTAGG
TATTTTCGAAATGAAAGAAACTGGGTTAGAAGAAGTGCACAATCCGTCCCAAATTTTTTTAGAAGAACGAATGAAAGGTG
CTTCCGGTTCGACAGTAGTTGCATCGATGGAAGGAACGAGACCAATTCTTGTGGAAATACAAGCCCTAATTTCTCCGACA
ACCTTTGGAAATCCACGGAGAATGGCAACAGGAATCGACCATAACCGCGTATCATTGCTCATGGCTGTGTTGGAAAAAAG
AGTCGGATTTTTGTTACAAAATCAAGATGCATATTTGAAAGCAGCCGGTGGCGTAAAGCTAGATGAACCGGCGATCGATT
TAGCGATTGCCATCAGCATAGCCTCCAGTTTTCGGGATCAACCAACGAAGGCAACGGATTGTTTTATCGGTGAAGTAGGT
CTCACGGGGGAAATCCGGCGGGTGTCAAGAATTGAACAACGGGTAAAGGAAGCGGAAAAACTCGGCTTTCAACGGGTCTT
CCTGCCGTATAACAACTTAGGTTCTTGGTGTGACTCCAGTCCGATTCAATTGGTCGGCGTTTCGACGATCGATGAGGCGT
TAAAAGTGGCTTTGAACTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-432)

AAA domain (AAA_25)

(70-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

72.331

100

0.723
  radA Streptococcus mitis NCTC 12261

63.377

99.346

0.63
  radA Streptococcus pneumoniae Rx1

63.377

99.346

0.63
  radA Streptococcus pneumoniae D39

63.377

99.346

0.63
  radA Streptococcus pneumoniae R6

63.377

99.346

0.63
  radA Streptococcus pneumoniae TIGR4

63.377

99.346

0.63
  radA Streptococcus mitis SK321

63.377

99.346

0.63