Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   OE104_RS09020 Genome accession   NZ_CP106878
Coordinates   1846182..1847129 (-) Length   315 a.a.
NCBI ID   WP_275416558.1    Uniprot ID   -
Organism   Fervidibacillus albus strain MEBiC13591     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1841182..1852129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OE104_RS08995 (OE104_09000) - 1841737..1842792 (-) 1056 WP_275416552.1 lactonase family protein -
  OE104_RS09000 (OE104_09005) - 1842951..1843277 (-) 327 WP_275416554.1 antibiotic biosynthesis monooxygenase -
  OE104_RS09005 (OE104_09010) - 1843383..1844327 (-) 945 WP_275416555.1 siderophore ABC transporter substrate-binding protein -
  OE104_RS09010 (OE104_09015) - 1844483..1845241 (-) 759 WP_275416556.1 ABC transporter ATP-binding protein -
  OE104_RS09015 (OE104_09020) - 1845235..1846185 (-) 951 WP_275416557.1 iron chelate uptake ABC transporter family permease subunit -
  OE104_RS09020 (OE104_09025) ceuB 1846182..1847129 (-) 948 WP_275416558.1 ABC transporter permease Machinery gene

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34745.04 Da        Isoelectric Point: 9.8761

>NTDB_id=736375 OE104_RS09020 WP_275416558.1 1846182..1847129(-) (ceuB) [Fervidibacillus albus strain MEBiC13591]
MKIRYMLLILVILSIVSVFIGVKEITPLDLFDLSDETVQILLISRLPRLISILIAGASMSIAGLIMQQLSKNKFVSPTTA
GTMDFARLGILVSMIVFASSSPLEKIVVAFVFALAGTFLFMKILENIKFKDAVFIPLVGLMLGNIVSSIATFFAYRSDLI
QNISSWLIGDFSLIIKGRYELIYISLPLLIIAYMYANRFTIAGLGEDFSKNLGLNYRQVVNIGLAIVALITSSVILTVGM
IPFLGLIIPNIVSIYQGDHLKKSIFHTAILGAIFVLVCDILGRIIIFPYEIPINLTVGVLGSGIFLYLLLRRQRT

Nucleotide


Download         Length: 948 bp        

>NTDB_id=736375 OE104_RS09020 WP_275416558.1 1846182..1847129(-) (ceuB) [Fervidibacillus albus strain MEBiC13591]
ATGAAAATCCGTTACATGTTATTAATTTTAGTAATTCTTTCCATTGTATCTGTTTTTATCGGGGTAAAGGAAATTACACC
TCTAGATTTATTTGATTTATCTGATGAAACTGTTCAAATTTTATTGATCAGTCGGTTACCGAGACTAATCAGTATATTGA
TTGCTGGTGCAAGCATGAGTATTGCTGGCTTAATTATGCAGCAGTTGAGCAAAAATAAGTTCGTTTCGCCGACGACGGCA
GGAACGATGGATTTTGCGCGTTTAGGAATTCTCGTTTCGATGATCGTATTTGCATCGAGCAGTCCTTTAGAGAAAATTGT
CGTCGCCTTCGTTTTTGCTTTGGCGGGAACATTTTTGTTCATGAAAATACTTGAAAACATTAAATTTAAAGATGCCGTAT
TCATTCCATTAGTCGGGTTAATGTTAGGGAATATAGTAAGTTCGATTGCTACATTTTTTGCCTACCGAAGCGATTTGATT
CAAAATATCTCTTCTTGGTTAATTGGGGATTTTTCGTTAATTATCAAAGGAAGATATGAACTAATCTATATCAGTTTACC
TTTGTTAATCATCGCTTATATGTATGCAAATCGGTTTACCATCGCCGGATTAGGGGAAGATTTTTCAAAAAATCTCGGAT
TAAATTATCGGCAAGTCGTAAATATTGGTTTGGCGATCGTCGCACTTATTACTTCATCGGTCATATTAACCGTAGGGATG
ATTCCTTTTTTAGGGTTAATTATTCCGAACATCGTATCCATTTATCAAGGGGACCATTTGAAAAAAAGTATATTCCATAC
CGCCATACTCGGAGCCATATTCGTGTTAGTTTGTGATATTCTCGGTCGAATCATTATTTTCCCATATGAAATCCCAATTA
ATTTAACAGTCGGGGTGTTAGGAAGTGGAATCTTTTTATATTTGCTTTTGAGGAGACAACGAACATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.396

99.365

0.521