Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   OE104_RS08320 Genome accession   NZ_CP106878
Coordinates   1695935..1697752 (-) Length   605 a.a.
NCBI ID   WP_275416430.1    Uniprot ID   A0A9E8LS91
Organism   Fervidibacillus albus strain MEBiC13591     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1690935..1702752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OE104_RS08295 (OE104_08300) - 1690987..1691604 (-) 618 WP_275416425.1 GTP pyrophosphokinase -
  OE104_RS08300 (OE104_08305) - 1691753..1692340 (+) 588 WP_275416426.1 CYTH domain-containing protein -
  OE104_RS08305 (OE104_08310) - 1692357..1692938 (+) 582 WP_275416427.1 lytic transglycosylase domain-containing protein -
  OE104_RS08310 (OE104_08315) - 1693553..1694422 (+) 870 WP_275416428.1 ClpXP adapter SpxH family protein -
  OE104_RS15180 - 1694779..1694943 (+) 165 WP_420842611.1 transposase -
  OE104_RS08315 (OE104_08320) - 1695514..1695795 (-) 282 WP_275416429.1 hypothetical protein -
  OE104_RS08320 (OE104_08325) pepF 1695935..1697752 (-) 1818 WP_275416430.1 oligoendopeptidase F Regulator
  OE104_RS08325 (OE104_08330) - 1697823..1699037 (-) 1215 WP_275416431.1 competence protein CoiA -
  OE104_RS08330 (OE104_08335) mecA 1699240..1699908 (-) 669 WP_275416432.1 adaptor protein MecA -
  OE104_RS08335 (OE104_08340) spxA 1700210..1700605 (-) 396 WP_275416433.1 transcriptional regulator SpxA -
  OE104_RS08340 (OE104_08345) - 1700981..1701175 (+) 195 WP_275416434.1 hypothetical protein -
  OE104_RS08345 (OE104_08350) trpS 1701492..1702484 (+) 993 WP_275419117.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69835.52 Da        Isoelectric Point: 5.0674

>NTDB_id=736370 OE104_RS08320 WP_275416430.1 1695935..1697752(-) (pepF) [Fervidibacillus albus strain MEBiC13591]
MTGAVKKLPARSEIPKEATWRLEDIFETDELWEKEFQEINDLLPKASEFQGTLGNSAEQLFKALTYRDEVMYRLGKLYTY
AHMRYDQDTTNGTYQGMNDRAQMLYTRASSQFAFIVPEILSIDEEKIQQFLSENEQLKLYEHAIEEINLHRPHVLSAEME
SVLAQASDVFGASSNTFGMLNNADLQFPTIQDENGDEVEVTHGRYINFLESDDRRVRRDAFKAVYDTYGKFQNTFASTLS
GQVKRDNFIASVRKYDSARHAALSSNQIPEKVYDQLVDTVNKNLHLLHRYVQLRKRMLKLDDLHMYDLYTPLVKDVKMDL
SYDEAKDIVLKGLAPLGEEYVAILKEGFENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWQNNVNNLYTLAHEFGHSVH
SYLTRKHQPYPYGNYSIFVAEVASTCNENLLTDYLLKTLDDDKKRLYILNHFLEGFRGTVFRQTMFAEFEHDIHVRAARG
EALTADLLTNVYYDLNKKYFGEGMTVDKEIGLEWARIPHFYYNYYVYQYATGFSAASALSKQIIEEGTPAVERYFGFLKA
GSSDYPIEVLKKAGVDMTSAKPVEEALRVFEEKLNEMEQLLTSAE

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=736370 OE104_RS08320 WP_275416430.1 1695935..1697752(-) (pepF) [Fervidibacillus albus strain MEBiC13591]
ATGACGGGTGCAGTGAAAAAACTTCCTGCAAGAAGTGAAATACCAAAAGAAGCAACGTGGCGATTAGAAGATATTTTCGA
AACGGACGAATTATGGGAAAAAGAATTTCAAGAAATCAACGACTTACTACCGAAAGCATCGGAATTTCAAGGCACGTTAG
GCAATAGTGCGGAACAATTGTTCAAAGCGTTAACCTATCGGGATGAGGTCATGTATCGACTTGGAAAATTGTATACGTAC
GCTCATATGCGCTACGATCAAGATACGACGAACGGCACGTATCAAGGAATGAACGATCGGGCCCAAATGTTGTATACGCG
GGCGAGCAGTCAATTTGCTTTCATCGTCCCAGAAATTTTGTCGATCGACGAGGAAAAAATTCAACAATTTCTATCGGAAA
ATGAACAATTGAAGCTTTATGAACATGCAATTGAAGAAATCAATTTGCATCGTCCCCATGTGTTATCGGCAGAAATGGAA
TCCGTATTAGCCCAAGCATCCGATGTTTTCGGAGCATCGAGCAATACGTTCGGCATGTTAAATAATGCGGATTTGCAATT
TCCGACGATTCAAGATGAAAATGGGGATGAAGTGGAAGTCACTCACGGTCGTTATATTAACTTTTTAGAAAGCGACGACC
GTAGAGTTCGGCGGGATGCCTTTAAAGCTGTTTACGATACGTACGGAAAATTCCAAAATACGTTTGCCAGCACTCTCAGT
GGTCAGGTGAAACGGGATAATTTTATCGCATCCGTTCGTAAATACGATTCCGCACGCCATGCAGCACTTTCATCGAATCA
AATTCCAGAAAAAGTGTATGATCAATTGGTCGATACGGTGAATAAAAATCTTCATCTTCTCCATCGTTACGTACAATTAC
GGAAACGGATGTTGAAGCTCGATGATCTCCATATGTACGACTTGTATACACCCCTCGTGAAAGATGTGAAAATGGATCTT
TCCTACGATGAGGCGAAGGATATCGTTTTAAAAGGATTAGCACCTCTCGGGGAAGAATATGTGGCGATTTTAAAGGAAGG
ATTTGAAAATCGTTGGGTCGATGTTTATGAAAATAAAGGAAAACGCAGTGGGGCATATTCGTCCGGAGCATATGGAACGA
ATCCGTATATTTTAATGAACTGGCAAAATAACGTAAACAATTTATACACGCTAGCCCATGAATTCGGCCATTCCGTTCAT
AGTTATTTAACGAGAAAACATCAACCGTATCCGTACGGTAATTATTCCATTTTTGTTGCTGAAGTCGCATCCACTTGTAA
CGAAAATCTTTTAACCGATTATTTATTAAAGACGTTGGATGATGATAAAAAACGGTTGTACATTTTAAATCACTTTTTGG
AAGGATTCCGTGGAACGGTTTTCCGGCAGACGATGTTCGCTGAATTTGAACACGATATCCATGTGCGCGCTGCCCGTGGA
GAGGCGTTGACAGCCGACTTATTAACGAACGTCTATTACGATTTGAACAAAAAATATTTCGGTGAAGGCATGACCGTAGA
TAAAGAAATCGGCTTGGAATGGGCGAGAATCCCACATTTTTATTACAATTATTACGTTTATCAATACGCCACTGGATTTA
GTGCAGCTTCCGCTTTAAGTAAGCAAATTATTGAGGAAGGAACACCTGCTGTCGAACGTTATTTCGGATTTTTGAAAGCC
GGAAGTTCTGACTATCCGATCGAAGTGTTAAAGAAAGCAGGTGTCGATATGACGAGCGCAAAACCGGTGGAAGAGGCTCT
ACGCGTATTCGAGGAAAAATTAAACGAAATGGAGCAGTTGCTTACATCCGCGGAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(209-588)

Oligopeptidase F (Peptidase_M3_N)

(118-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.269

97.686

0.501