Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   OE104_RS03820 Genome accession   NZ_CP106878
Coordinates   778867..780561 (+) Length   564 a.a.
NCBI ID   WP_275418257.1    Uniprot ID   A0A9E8LWN2
Organism   Fervidibacillus albus strain MEBiC13591     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 773867..785561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OE104_RS03800 (OE104_03800) - 774922..775506 (+) 585 WP_275418253.1 hypothetical protein -
  OE104_RS03805 (OE104_03805) dxs 775531..777423 (+) 1893 WP_275418254.1 1-deoxy-D-xylulose-5-phosphate synthase -
  OE104_RS03810 (OE104_03810) - 777427..778245 (+) 819 WP_275418255.1 TlyA family RNA methyltransferase -
  OE104_RS03815 (OE104_03815) ahrC 778394..778846 (+) 453 WP_275418256.1 transcriptional regulator AhrC/ArgR -
  OE104_RS03820 (OE104_03820) recN 778867..780561 (+) 1695 WP_275418257.1 DNA repair protein RecN Machinery gene
  OE104_RS03825 (OE104_03825) spoIVB 780701..781984 (+) 1284 WP_275418258.1 SpoIVB peptidase -
  OE104_RS03830 (OE104_03830) spo0A 782101..782916 (+) 816 WP_275419052.1 sporulation transcription factor Spo0A -
  OE104_RS03835 (OE104_03835) - 783045..783770 (+) 726 WP_275418259.1 glycerophosphodiester phosphodiesterase -
  OE104_RS03840 (OE104_03840) - 783761..784015 (-) 255 WP_275418260.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 564 a.a.        Molecular weight: 64224.25 Da        Isoelectric Point: 5.2936

>NTDB_id=736362 OE104_RS03820 WP_275418257.1 778867..780561(+) (recN) [Fervidibacillus albus strain MEBiC13591]
MLAELSIKNFAIIEQLTVSFQKGFTVLTGETGAGKSIIIDAIHLLVGGRGSVDFIRHGADKAEIEGLFLVEDDHPAVDQL
REMGIDVEEGMIVLKRDIHSSGKSVCRMNGKLVTISSLRQLGANLVDIHGQHEHQELMDRNSHLRLLDEFGGEEVKKTLK
EYATIFREYKKLKKELRNLTENEQQMVQKYDLLSFQHQEILSANLQIGEDETLLTEKKRLMNFEQLFHAVNMGYDALQGE
QKGLDWLGLTMNHLEEASQIDEKIKPFYEIVSNCYYQMEDVVGELRQYLDGLEFNPEHINEVEERLTVIHQLKRKYGNTV
EEILEYVAKIEEEIELITNRESHIESITNKLRSVEKDLLVEGKHLSKLRKRVAETLTEKIEKELKDLYMDKTKFEVRIVA
NSDFKADGIDEVEFFVSTNPGEPKKPLAKVASGGELSRMMLALKTIFSNHQGVTSIIFDEVDTGVSGRVAEAIGEKIYEI
SVDSQVLSITHLPQVASMGDHHYFITKEIKEDRTVTSIRILNEQERITELARMNSGSKMTEATINHAKEMLHIAQRKKSE
KSSG

Nucleotide


Download         Length: 1695 bp        

>NTDB_id=736362 OE104_RS03820 WP_275418257.1 778867..780561(+) (recN) [Fervidibacillus albus strain MEBiC13591]
ATGTTAGCCGAATTATCGATAAAAAATTTCGCCATCATCGAACAACTAACCGTCTCCTTTCAAAAAGGTTTTACCGTATT
AACGGGTGAAACAGGTGCGGGAAAATCGATTATCATCGATGCAATCCATTTGCTCGTCGGCGGAAGGGGTTCCGTCGATT
TTATCCGTCACGGAGCGGATAAAGCCGAAATCGAAGGTCTTTTTTTAGTTGAAGATGATCATCCAGCCGTCGATCAGCTT
CGAGAAATGGGCATCGACGTAGAGGAAGGGATGATCGTTTTAAAACGGGACATCCATTCATCGGGAAAAAGCGTATGTAG
GATGAATGGGAAACTCGTTACTATTTCTTCTTTACGACAGTTAGGCGCCAATCTCGTCGATATTCACGGGCAACATGAAC
ATCAAGAGTTAATGGATCGCAACTCCCATCTCCGTTTGTTGGATGAATTCGGCGGGGAAGAAGTGAAAAAAACGTTAAAG
GAATATGCAACGATTTTTCGGGAATACAAAAAATTGAAAAAAGAATTGCGAAACTTGACGGAAAATGAACAACAAATGGT
GCAAAAATACGATCTCCTTTCCTTTCAACATCAAGAAATATTAAGTGCCAATTTGCAAATTGGTGAAGATGAAACCCTTT
TGACTGAAAAGAAACGACTGATGAATTTTGAGCAACTGTTTCATGCGGTTAATATGGGATATGACGCCCTTCAAGGTGAA
CAAAAAGGACTCGATTGGCTCGGATTGACGATGAATCATTTGGAAGAAGCTAGCCAAATTGATGAAAAGATAAAACCTTT
TTATGAAATCGTGAGCAATTGCTATTATCAAATGGAAGATGTTGTCGGGGAATTACGCCAATATTTGGACGGGCTAGAGT
TTAACCCTGAACATATTAATGAAGTGGAGGAACGGTTAACTGTCATCCATCAACTGAAAAGAAAATACGGAAATACGGTT
GAAGAAATTCTTGAATATGTTGCGAAAATCGAAGAAGAAATCGAACTCATTACGAATCGTGAAAGTCATATTGAATCGAT
TACGAATAAATTGCGTTCCGTTGAAAAGGATTTGCTCGTTGAAGGAAAACATTTATCGAAGTTGCGAAAACGGGTCGCTG
AAACATTAACGGAAAAGATCGAAAAGGAATTGAAGGATTTATATATGGACAAAACCAAATTCGAAGTTCGAATCGTTGCT
AATTCCGATTTCAAAGCCGACGGAATTGATGAAGTTGAATTTTTCGTTAGTACGAATCCCGGGGAGCCGAAAAAACCACT
TGCAAAAGTCGCTTCCGGTGGTGAGCTATCGAGGATGATGTTAGCGTTAAAAACGATTTTTTCCAATCATCAAGGAGTTA
CATCGATAATATTTGATGAAGTAGATACCGGGGTGAGCGGACGGGTCGCCGAAGCCATTGGTGAAAAAATATACGAAATT
TCCGTCGATTCCCAAGTATTATCGATCACCCATTTGCCGCAAGTGGCTAGCATGGGAGATCACCACTATTTTATTACGAA
GGAAATCAAAGAAGATCGTACCGTTACGTCGATTCGTATATTAAACGAACAAGAACGAATAACGGAACTTGCGCGAATGA
ATTCGGGAAGCAAAATGACGGAAGCCACGATCAATCACGCAAAAGAAATGTTGCACATTGCTCAGCGGAAAAAATCTGAG
AAGTCTTCGGGTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

55.401

100

0.564