Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OE105_RS12610 Genome accession   NZ_CP106877
Coordinates   2686851..2688167 (+) Length   438 a.a.
NCBI ID   WP_275422197.1    Uniprot ID   A0A9E8M204
Organism   Fervidibacillus halotolerans strain MEBiC13594     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2681851..2693167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OE105_RS12590 (OE105_12595) - 2682117..2682578 (+) 462 WP_275420505.1 CtsR family transcriptional regulator -
  OE105_RS12595 (OE105_12600) - 2682618..2683157 (+) 540 WP_275420506.1 UvrB/UvrC motif-containing protein -
  OE105_RS12600 (OE105_12605) - 2683157..2684227 (+) 1071 WP_275420507.1 protein arginine kinase -
  OE105_RS12605 (OE105_12610) clpC 2684249..2686678 (+) 2430 WP_275420508.1 ATP-dependent protease ATP-binding subunit ClpC -
  OE105_RS12610 (OE105_12615) radA 2686851..2688167 (+) 1317 WP_275422197.1 DNA repair protein RadA Machinery gene
  OE105_RS12615 (OE105_12620) - 2688286..2689374 (+) 1089 WP_275420509.1 PIN/TRAM domain-containing protein -
  OE105_RS12620 (OE105_12625) ispD 2689461..2690144 (+) 684 WP_275420510.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  OE105_RS12625 (OE105_12630) ispF 2690208..2690699 (+) 492 WP_275420511.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  OE105_RS12630 (OE105_12635) gltX 2690776..2692230 (+) 1455 WP_275420512.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 438 a.a.        Molecular weight: 48433.74 Da        Isoelectric Point: 7.4817

>NTDB_id=736349 OE105_RS12610 WP_275422197.1 2686851..2688167(+) (radA) [Fervidibacillus halotolerans strain MEBiC13594]
MGRCPNCNEWNTFTEEITEVKGKRRTFYNGIKQDQEKRKPVPLSKVESIEEARILTNSKELNRVLGGGIVRGSLVLIGGD
PGIGKSTLLLQVSNQLANKDLTVLYISGEESIKQTKLRADRLGTTSERLFVLAETNLLLIEEAIREIKPDFTVVDSIQTI
FHPDITSAPGSVSQVRESTSELMRIAKINGIPIFIVGHVTKEGNLAGPRLLEHMVDTVLYFEGERHHAYRILRAVKNRFG
STNELGIFEMKETGLEEVHNPSQIFLEERMKGASGSTVVASMEGTRPILVEIQALISPTTFGNPRRMATGIDHNRVSLLM
AVLEKRVGFLLQNQDAYLKAAGGVKLDEPAIDLAIAISIASSFRDQPTKPTDCFIGEVGLTGEIRRVSRIEQRVKEAEKL
GFKRVFLPSNNLGSWSESIPIQLVGVSTIDEALKLALH

Nucleotide


Download         Length: 1317 bp        

>NTDB_id=736349 OE105_RS12610 WP_275422197.1 2686851..2688167(+) (radA) [Fervidibacillus halotolerans strain MEBiC13594]
ATGGGTCGTTGTCCAAACTGTAATGAATGGAATACGTTCACAGAAGAAATTACTGAAGTAAAAGGTAAACGACGTACATT
TTACAACGGAATTAAACAAGATCAAGAGAAAAGAAAGCCCGTCCCTTTATCGAAGGTCGAATCGATCGAAGAAGCCCGGA
TATTAACTAATTCAAAGGAATTAAACCGTGTTTTGGGAGGTGGGATTGTTAGGGGGTCCCTCGTTTTAATCGGGGGTGAT
CCTGGAATTGGAAAATCGACTTTGTTACTCCAAGTTTCGAATCAGCTCGCCAATAAGGATTTAACCGTTTTGTATATTTC
TGGAGAGGAATCGATTAAACAAACGAAATTAAGGGCGGACCGTTTAGGTACAACTTCTGAACGTCTATTTGTTCTTGCCG
AAACGAATCTGTTATTGATCGAAGAAGCGATAAGGGAAATCAAGCCGGATTTTACAGTCGTTGATTCAATTCAAACGATT
TTCCATCCTGATATTACCTCCGCACCCGGTTCAGTATCCCAAGTTCGTGAAAGCACAAGTGAGCTGATGCGTATTGCGAA
AATAAATGGTATCCCGATTTTTATCGTCGGTCATGTGACAAAGGAAGGCAATCTTGCAGGTCCCCGATTATTAGAGCATA
TGGTCGATACTGTTTTATATTTCGAAGGAGAAAGACATCACGCTTATCGGATTTTACGGGCAGTGAAAAACCGTTTTGGC
TCGACGAATGAATTAGGCATTTTCGAAATGAAAGAAACCGGGTTGGAAGAAGTTCATAATCCGTCACAAATTTTTTTAGA
AGAGCGGATGAAAGGTGCTTCTGGTTCAACAGTCGTTGCATCTATGGAAGGGACAAGACCAATCCTCGTCGAAATTCAAG
CCCTTATTTCCCCAACGACATTTGGTAATCCGCGCAGAATGGCAACAGGCATCGACCATAATCGGGTATCCCTATTAATG
GCGGTTTTGGAAAAGAGGGTTGGATTTTTGTTACAAAATCAAGATGCCTATTTGAAGGCTGCAGGTGGCGTTAAGCTAGA
TGAACCGGCGATCGATTTAGCAATTGCTATAAGTATTGCTTCTAGTTTCCGGGATCAACCGACGAAACCTACCGATTGTT
TTATCGGTGAAGTAGGTCTTACAGGTGAAATTCGACGTGTTTCTAGAATTGAACAAAGAGTGAAAGAAGCGGAAAAACTG
GGCTTTAAACGGGTTTTCCTTCCGTCTAACAACTTAGGGTCTTGGTCTGAATCCATCCCAATTCAATTAGTAGGTGTGTC
TACGATTGATGAGGCGTTAAAATTGGCATTACATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-411)

AAA domain (AAA_25)

(45-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.461

100

0.715
  radA Streptococcus mitis SK321

63.908

99.315

0.635
  radA Streptococcus mitis NCTC 12261

63.908

99.315

0.635
  radA Streptococcus pneumoniae Rx1

63.908

99.315

0.635
  radA Streptococcus pneumoniae D39

63.908

99.315

0.635
  radA Streptococcus pneumoniae R6

63.908

99.315

0.635
  radA Streptococcus pneumoniae TIGR4

63.908

99.315

0.635