Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   DO80_RS06655 Genome accession   NZ_AP019730
Coordinates   1336316..1337629 (-) Length   437 a.a.
NCBI ID   WP_172620372.1    Uniprot ID   -
Organism   Helicobacter pylori strain TN2wt     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1331316..1342629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DO80_RS06625 (DO80_12840) nadC 1331779..1332600 (-) 822 WP_108303724.1 carboxylating nicotinate-nucleotide diphosphorylase -
  DO80_RS06630 (DO80_12850) nadA 1332600..1333610 (-) 1011 WP_108303723.1 quinolinate synthase NadA -
  DO80_RS06635 (DO80_12860) - 1333600..1334403 (-) 804 WP_108303722.1 phosphatidylserine decarboxylase -
  DO80_RS06640 (DO80_12870) - 1334400..1334903 (-) 504 WP_000953102.1 DUF6115 domain-containing protein -
  DO80_RS06645 (DO80_12880) - 1334916..1335410 (-) 495 WP_172414155.1 hypothetical protein -
  DO80_RS06650 (DO80_12890) mqnP 1335403..1336287 (-) 885 WP_000913963.1 menaquinone biosynthesis prenyltransferase MqnP -
  DO80_RS06655 (DO80_12900) comEC/comE3 1336316..1337629 (-) 1314 WP_172620372.1 ComEC/Rec2 family competence protein Machinery gene
  DO80_RS06660 (DO80_12910) - 1337626..1339092 (-) 1467 WP_108303721.1 replicative DNA helicase -
  DO80_RS06665 (DO80_12920) - 1339103..1340497 (-) 1395 WP_108303720.1 NAD(P)H-hydrate dehydratase -
  DO80_RS06670 (DO80_12930) crdS 1340500..1341702 (-) 1203 WP_108303719.1 copper-sensing histidine kinase CrdS -
  DO80_RS06675 (DO80_12940) crdR 1341668..1342309 (-) 642 WP_108303718.1 copper response regulator transcription factor CrdR -
  DO80_RS06680 (DO80_12950) - 1342395..1342619 (-) 225 Protein_1261 restriction endonuclease subunit R -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50142.01 Da        Isoelectric Point: 9.8368

>NTDB_id=73633 DO80_RS06655 WP_172620372.1 1336316..1337629(-) (comEC/comE3) [Helicobacter pylori strain TN2wt]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAVSGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
TLVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDSILNMPLAIPTISVFSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=73633 DO80_RS06655 WP_172620372.1 1336316..1337629(-) (comEC/comE3) [Helicobacter pylori strain TN2wt]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGCAATTTATACCGCGCATTATTTATAGGGGATAGTTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCGTTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACTTCTTCTTTTTTGGTGCGATCTTTTCAAGTCATAAGCTTAAGC
ACGCTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATAGTA
TTTTAAACATGCCTTTAGCAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGCGCACGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945

Multiple sequence alignment