Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   OE105_RS02785 Genome accession   NZ_CP106877
Coordinates   597884..599713 (+) Length   609 a.a.
NCBI ID   WP_275421210.1    Uniprot ID   A0A9E8M1B8
Organism   Fervidibacillus halotolerans strain MEBiC13594     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 592884..604713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OE105_RS02760 (OE105_02760) trpS 593133..594122 (-) 990 WP_275421206.1 tryptophan--tRNA ligase -
  OE105_RS02765 (OE105_02765) - 594453..594638 (-) 186 WP_275421207.1 hypothetical protein -
  OE105_RS02770 (OE105_02770) spxA 595020..595415 (+) 396 WP_275421208.1 transcriptional regulator SpxA -
  OE105_RS02775 (OE105_02775) mecA 595720..596388 (+) 669 WP_275421209.1 adaptor protein MecA -
  OE105_RS02780 (OE105_02780) - 596608..597789 (+) 1182 WP_275422075.1 competence protein CoiA -
  OE105_RS02785 (OE105_02785) pepF 597884..599713 (+) 1830 WP_275421210.1 oligoendopeptidase F Regulator
  OE105_RS02790 (OE105_02790) - 599958..600134 (-) 177 WP_275421211.1 hypothetical protein -
  OE105_RS02795 (OE105_02795) - 600503..601369 (-) 867 WP_275421212.1 ClpXP adapter SpxH family protein -
  OE105_RS02800 (OE105_02800) - 601812..602408 (-) 597 WP_275421213.1 lytic transglycosylase domain-containing protein -
  OE105_RS02805 (OE105_02805) - 602405..603013 (-) 609 WP_275421214.1 CYTH domain-containing protein -
  OE105_RS02810 (OE105_02810) - 603162..603779 (+) 618 WP_275421215.1 GTP pyrophosphokinase -
  OE105_RS02815 (OE105_02815) - 603793..604587 (+) 795 WP_275421216.1 NAD kinase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70608.65 Da        Isoelectric Point: 5.3531

>NTDB_id=736314 OE105_RS02785 WP_275421210.1 597884..599713(+) (pepF) [Fervidibacillus halotolerans strain MEBiC13594]
MTNGKSTVKTLPARSEIPEEATWRLEDIFATDELWEKEFHEINDLLPKASEYKGTLGKSADHLFKALKFRDDVMFRLEKL
YVYAHMRYDQDTTNATYQGMNDRAKMLYTRASSQFAFIVPEILSIDEEKIRQFFDENEDLKLYEHQIEEINLHRPHVLSA
EMEAILAQASDVFGASSNIFGMLNNADLQFPTIIDENGEEVEVTHGRFITFLESDDRRVRRDAFKAVYDTYGRFRNTFAS
TLSGQVKRDNFIASVRKYNSARHAALSANHIPEKVYDQLVDTVNKNLHLLHRYVELRKRMLNIDDLHIYDLYTPLVKDVK
MEISYEDAKEIVLKGLAPLGEDYVAILKEGFENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWQNNVNNLYTLAHEFGH
SVHSYLTRKHQPYPYGNYSIFVAEVASTCNENLLTDYLLKTLDDDKKRLYVLNHFLEGFRGTVFRQTMFAEFEHDIHVRA
ARGEALTADLLTKVYYDLNKKYFGEGMTVDEEIGLEWARIPHFYYNYYVYQYATGFSAASALSKQIIEEGEPAVKRYIEF
LKAGSSDYPIEVLKKAGVDMTSPKPMEEALRVFEEKLSEMERLLSSVDQ

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=736314 OE105_RS02785 WP_275421210.1 597884..599713(+) (pepF) [Fervidibacillus halotolerans strain MEBiC13594]
ATGACTAATGGAAAAAGCACAGTAAAAACACTTCCTGCAAGAAGTGAAATCCCAGAAGAAGCTACATGGAGATTAGAAGA
TATTTTTGCAACGGATGAATTATGGGAGAAAGAATTTCATGAAATAAACGATTTATTACCGAAAGCATCGGAATATAAAG
GAACGTTAGGAAAAAGTGCGGATCACTTGTTCAAAGCATTAAAATTTCGGGATGATGTCATGTTCAGGCTCGAAAAACTA
TATGTATATGCCCATATGCGTTATGATCAAGATACGACCAATGCTACTTATCAAGGAATGAATGATCGGGCAAAGATGTT
ATATACACGGGCAAGTAGTCAATTTGCATTTATTGTCCCTGAAATTTTATCAATTGATGAAGAAAAAATTCGTCAATTTT
TTGATGAAAACGAAGATCTAAAACTTTATGAACATCAAATTGAAGAAATTAATTTACATCGACCACATGTATTATCTGCT
GAAATGGAAGCAATTTTAGCCCAAGCATCCGACGTTTTCGGTGCATCAAGCAATATCTTTGGCATGTTAAACAATGCGGA
TTTACAGTTTCCTACAATCATTGATGAAAATGGGGAGGAAGTAGAAGTAACCCACGGGCGTTTTATCACCTTTTTAGAAA
GTGACGATCGTAGAGTAAGACGTGATGCATTTAAAGCTGTTTACGACACATACGGACGCTTCCGAAACACTTTTGCCAGC
ACCCTTAGTGGTCAAGTGAAGCGGGATAATTTTATCGCATCCGTTAGGAAATATAATTCTGCTCGGCATGCAGCCCTTTC
CGCTAATCATATTCCTGAAAAAGTATACGATCAGCTAGTTGATACAGTAAACAAAAATCTCCATCTTCTCCATCGCTATG
TGGAATTGAGAAAACGGATGTTAAACATTGACGATTTGCATATATATGATTTATATACTCCACTTGTGAAAGATGTAAAA
ATGGAGATTTCTTATGAAGATGCTAAGGAGATCGTCTTAAAAGGTTTAGCACCCCTTGGAGAAGACTATGTGGCCATTTT
AAAAGAAGGATTTGAAAACAGGTGGGTCGACGTTTATGAAAATAAAGGAAAGCGAAGTGGCGCCTATTCTTCAGGTGCTT
ATGGAACGAATCCGTATATTTTAATGAATTGGCAAAATAACGTGAACAATTTATATACGCTAGCCCATGAATTTGGTCAT
TCCGTTCATAGTTATTTAACACGGAAACATCAACCGTACCCATATGGAAATTATTCCATTTTCGTCGCTGAAGTTGCCAG
CACTTGTAATGAAAATCTTTTGACAGATTATTTATTGAAAACGTTGGATGATGATAAAAAACGGCTATATGTATTAAATC
ATTTTTTGGAAGGCTTCCGTGGAACGGTTTTTCGACAAACGATGTTTGCAGAATTCGAACATGATATCCATGTTCGGGCT
GCCCGGGGAGAAGCGTTAACAGCAGATTTATTAACAAAGGTGTATTACGATTTAAATAAAAAATATTTCGGTGAAGGGAT
GACCGTAGACGAAGAAATTGGTTTAGAATGGGCGAGAATCCCGCATTTTTACTATAATTATTACGTTTACCAATATGCTA
CCGGATTTAGTGCCGCATCCGCATTAAGCAAGCAAATTATCGAGGAAGGAGAGCCGGCAGTAAAACGATATATCGAGTTT
TTGAAAGCAGGTAGCTCCGACTATCCAATCGAGGTATTAAAGAAAGCAGGAGTCGATATGACGAGTCCTAAGCCGATGGA
AGAAGCTTTACGAGTATTTGAAGAAAAATTAAGTGAAATGGAACGATTACTTTCTTCTGTTGATCAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(121-190)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.438

97.044

0.499